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MS002860 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002860
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMajor centromere autoantigen B
Genome locationscaffold359:260122..260853
RNA-Seq ExpressionMS002860
SyntenyMS002860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039742.1 hypothetical protein E6C27_scaffold122G00020 [Cucumis melo var. makuwa]4.6e-3347.18Show/hide
Query:  LVVALDKEVVGNENPEEEEAANGEDELKFWEELEEKEFWNGEVDANDVD------DANKPDEDVPKGFDPKLFVDNEAPNKAEPELPEDEA-VPNRGEIE
        ++V LDK +VGNENP E EAANGEDE+KFWEELEE+E WNGE+D +D +      D   P+ED PKG D         PNK EP LPED A VPNR   E
Subjt:  LVVALDKEVVGNENPEEEEAANGEDELKFWEELEEKEFWNGEVDANDVD------DANKPDEDVPKGFDPKLFVDNEAPNKAEPELPEDEA-VPNRGEIE

Query:  PEAAADAPGKADP------------GVVVGAEDAPPNKDGA-EAPADGAAPKREKEELPAEE--------AELP-------DGA----APDMDPDELPAA
        PEA A+AP  ADP             + V AEDAPPNKDGA +APADGAAP +  +E+PAEE         ELP       DGA    AP+ + DE+P  
Subjt:  PEAAADAPGKADP------------GVVVGAEDAPPNKDGA-EAPADGAAPKREKEELPAEE--------AELP-------DGA----APDMDPDELPAA

Query:  GAAPKREPDELPADGAVPNVKEANPPELPADEGAPNK--GEGFEEDVAGKGDDPKEVEV-DPNANPELEENGEAEEEEEDWEEE
         AAP +  +E   +   PN KE NP E   DE  PNK   EG EE+   + D P E E  +     E+EE  E E + ++ EEE
Subjt:  GAAPKREPDELPADGAVPNVKEANPPELPADEGAPNK--GEGFEEDVAGKGDDPKEVEV-DPNANPELEENGEAEEEEEDWEEE
TrEMBL top hitse value%identityAlignment
A0A5A7T8D7 Major centromere autoantigen B2.2e-3347.18Show/hide
Query:  LVVALDKEVVGNENPEEEEAANGEDELKFWEELEEKEFWNGEVDANDVD------DANKPDEDVPKGFDPKLFVDNEAPNKAEPELPEDEA-VPNRGEIE
        ++V LDK +VGNENP E EAANGEDE+KFWEELEE+E WNGE+D +D +      D   P+ED PKG D         PNK EP LPED A VPNR   E
Subjt:  LVVALDKEVVGNENPEEEEAANGEDELKFWEELEEKEFWNGEVDANDVD------DANKPDEDVPKGFDPKLFVDNEAPNKAEPELPEDEA-VPNRGEIE

Query:  PEAAADAPGKADP------------GVVVGAEDAPPNKDGA-EAPADGAAPKREKEELPAEE--------AELP-------DGA----APDMDPDELPAA
        PEA A+AP  ADP             + V AEDAPPNKDGA +APADGAAP +  +E+PAEE         ELP       DGA    AP+ + DE+P  
Subjt:  PEAAADAPGKADP------------GVVVGAEDAPPNKDGA-EAPADGAAPKREKEELPAEE--------AELP-------DGA----APDMDPDELPAA

Query:  GAAPKREPDELPADGAVPNVKEANPPELPADEGAPNK--GEGFEEDVAGKGDDPKEVEV-DPNANPELEENGEAEEEEEDWEEE
         AAP +  +E   +   PN KE NP E   DE  PNK   EG EE+   + D P E E  +     E+EE  E E + ++ EEE
Subjt:  GAAPKREPDELPADGAVPNVKEANPPELPADEGAPNK--GEGFEEDVAGKGDDPKEVEV-DPNANPELEENGEAEEEEEDWEEE
A0A7J7CCG5 Uncharacterized protein6.3e-0440.11Show/hide
Query:  FVDNEAPNKAEPELPEDEAVPNRGEIEPEAAAD--APGKADPGVVVGAEDAPPNKDGAEAPADGAAPKREKEELPAEEAELPDGAAPDMDPDELPAAGAA
        F D   PNK EPEL  DE VPN+  +EPE AAD  AP K +P     A+D  PNK   E  AD    K+ + EL  +E  +P    P++  DE+      
Subjt:  FVDNEAPNKAEPELPEDEAVPNRGEIEPEAAAD--APGKADPGVVVGAEDAPPNKDGAEAPADGAAPKREKEELPAEEAELPDGAAPDMDPDELPAAGAA

Query:  PKREPDELPADGAVPNVKEANPPELPADEGAPNKGE--GFEEDVAGKGDDPKEVEVDP-NANPELEENGEAEEEEED
        PK+   EL AD  VP   E   PEL ADEG PN G     EE+   +G    E+ +D   A+PE+   G A    ED
Subjt:  PKREPDELPADGAVPNVKEANPPELPADEGAPNKGE--GFEEDVAGKGDDPKEVEVDP-NANPELEENGEAEEEEED
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAGTAGTAGCTTTGGACAAAGAAGTGGTCGGAAACGAAAATCCAGAAGAAGAAGAAGCCGCAAATGGTGAAGACGAACTTAAATTTTGGGAAGAACTTGAAGAAAAAGA
GTTCTGGAACGGAGAGGTCGATGCTAATGATGTAGATGACGCAAACAAGCCCGATGAAGATGTACCGAAGGGATTTGACCCCAAACTGTTCGTGGATAACGAAGCCCCAA
ACAAAGCTGAACCTGAACTTCCTGAAGATGAAGCTGTCCCAAACAGAGGCGAAATAGAACCAGAAGCGGCCGCAGATGCACCAGGCAAAGCTGATCCCGGAGTTGTAGTG
GGTGCAGAAGACGCCCCTCCGAACAAGGATGGCGCCGAGGCCCCTGCAGATGGGGCAGCCCCAAAGAGAGAAAAAGAAGAACTCCCGGCGGAGGAAGCAGAGCTCCCGGA
TGGAGCAGCCCCAGACATGGACCCAGATGAGCTGCCGGCGGCCGGAGCAGCCCCAAAAAGGGAGCCAGATGAGCTCCCGGCCGATGGGGCAGTCCCGAACGTGAAAGAAG
CTAACCCACCTGAGCTACCTGCAGACGAAGGAGCACCGAACAAGGGGGAAGGGTTTGAGGAGGATGTTGCAGGGAAAGGGGATGATCCGAAAGAGGTGGAGGTGGATCCG
AATGCGAATCCAGAGCTTGAAGAAAATGGGGAAGCAGAAGAAGAAGAAGAAGATTGGGAGGAGGAAGATCCG
mRNA sequenceShow/hide mRNA sequence
CTAGTAGTAGCTTTGGACAAAGAAGTGGTCGGAAACGAAAATCCAGAAGAAGAAGAAGCCGCAAATGGTGAAGACGAACTTAAATTTTGGGAAGAACTTGAAGAAAAAGA
GTTCTGGAACGGAGAGGTCGATGCTAATGATGTAGATGACGCAAACAAGCCCGATGAAGATGTACCGAAGGGATTTGACCCCAAACTGTTCGTGGATAACGAAGCCCCAA
ACAAAGCTGAACCTGAACTTCCTGAAGATGAAGCTGTCCCAAACAGAGGCGAAATAGAACCAGAAGCGGCCGCAGATGCACCAGGCAAAGCTGATCCCGGAGTTGTAGTG
GGTGCAGAAGACGCCCCTCCGAACAAGGATGGCGCCGAGGCCCCTGCAGATGGGGCAGCCCCAAAGAGAGAAAAAGAAGAACTCCCGGCGGAGGAAGCAGAGCTCCCGGA
TGGAGCAGCCCCAGACATGGACCCAGATGAGCTGCCGGCGGCCGGAGCAGCCCCAAAAAGGGAGCCAGATGAGCTCCCGGCCGATGGGGCAGTCCCGAACGTGAAAGAAG
CTAACCCACCTGAGCTACCTGCAGACGAAGGAGCACCGAACAAGGGGGAAGGGTTTGAGGAGGATGTTGCAGGGAAAGGGGATGATCCGAAAGAGGTGGAGGTGGATCCG
AATGCGAATCCAGAGCTTGAAGAAAATGGGGAAGCAGAAGAAGAAGAAGAAGATTGGGAGGAGGAAGATCCG
Protein sequenceShow/hide protein sequence
LVVALDKEVVGNENPEEEEAANGEDELKFWEELEEKEFWNGEVDANDVDDANKPDEDVPKGFDPKLFVDNEAPNKAEPELPEDEAVPNRGEIEPEAAADAPGKADPGVVV
GAEDAPPNKDGAEAPADGAAPKREKEELPAEEAELPDGAAPDMDPDELPAAGAAPKREPDELPADGAVPNVKEANPPELPADEGAPNKGEGFEEDVAGKGDDPKEVEVDP
NANPELEENGEAEEEEEDWEEEDP