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MS002874 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002874
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationscaffold359:380144..381328
RNA-Seq ExpressionMS002874
SyntenyMS002874
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR019404 - Mediator complex, subunit Med11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]7.6e-5895.76Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTID+YQVK+ED+
Subjt:  LDGMKQTIDEYQVKVEDA
XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]2.8e-60100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVKVEDA
Subjt:  LDGMKQTIDEYQVKVEDA
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]1.4e-5998.31Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+ED+
Subjt:  LDGMKQTIDEYQVKVEDA
XP_022973172.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima]1.5e-5897.46Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+EDA
Subjt:  LDGMKQTIDEYQVKVEDA
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]6.2e-6099.15Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+EDA
Subjt:  LDGMKQTIDEYQVKVEDA
TrEMBL top hitse value%identityAlignment
A0A0A0L450 Mediator of RNA polymerase II transcription subunit 117.2e-5479.29Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK                      DIQVTLRDEIKSACEYRPFEK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK

Query:  CDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA
        CDYSSRITNELCCKKLEYM+SKLDGMKQTID+YQVK+ED+
Subjt:  CDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 113.7e-5895.76Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTID+YQVK+ED+
Subjt:  LDGMKQTIDEYQVKVEDA
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 111.4e-60100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVKVEDA
Subjt:  LDGMKQTIDEYQVKVEDA
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 116.7e-6098.31Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+ED+
Subjt:  LDGMKQTIDEYQVKVEDA
A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 117.4e-5997.46Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYQVKVEDA
        LDGMKQTIDEYQVK+EDA
Subjt:  LDGMKQTIDEYQVKVEDA
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 115.3e-4675.68Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein3.8e-4775.68Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGCTGACCCAAAATACTTCGTTACAACGACTTCAAAATGTGGAGAAGAGAATTGTGAGGGTCTTGGAGCTAGCAGGGGGAGTTATGGAAGAGCTTGCCAACCC
TGCTGGTCCAAGAAAGGAATTTGTTAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATACC
GTCCATTCGAGAAGTGTGATTATAGTTCAAGGATAACCAATGAACTTTGCTGCAAGAAACTAGAATACATGATCTCAAAGTTGGATGGAATGAAACAAACTATAGATGAA
TATCAAGTGAAAGTGGAAGATGCT
mRNA sequenceShow/hide mRNA sequence
ATGGATCCGCTGACCCAAAATACTTCGTTACAACGACTTCAAAATGTGGAGAAGAGAATTGTGAGGGTCTTGGAGCTAGCAGGGGGAGTTATGGAAGAGCTTGCCAACCC
TGCTGGTCCAAGAAAGGAATTTGTTAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATACC
GTCCATTCGAGAAGTGTGATTATAGTTCAAGGATAACCAATGAACTTTGCTGCAAGAAACTAGAATACATGATCTCAAAGTTGGATGGAATGAAACAAACTATAGATGAA
TATCAAGTGAAAGTGGAAGATGCT
Protein sequenceShow/hide protein sequence
MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDE
YQVKVEDA