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MS002877 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002877
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 1, chloroplastic
Genome locationscaffold359:396165..396359
RNA-Seq ExpressionMS002877
SyntenyMS002877
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
InterPro domainsIPR044983 - Photosynthetic NDH subunit of subcomplex B 1, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058709.1 photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa]1.3e-1475.36Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVEIASLGLKL+G V+ C  VIS     N LFFPAIQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
KAG6575629.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.7e-1473.91Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVE+ASLGLKL+G V+ C  VIS     N LFFPAIQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
XP_008461180.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis melo]1.3e-1475.36Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVEIASLGLKL+G V+ C  VIS     N LFFPAIQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
XP_022145001.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Momordica charantia]1.3e-1475.36Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVEIASLGLKL+G V+ C  VIS     N LFFPAIQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
XP_023548446.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subsp. pepo]1.7e-1473.91Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVE+ASLGLKL+G V+ C  VIS     N LFFPAIQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
TrEMBL top hitse value%identityAlignment
A0A1S3CEK1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic6.2e-1575.36Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVEIASLGLKL+G V+ C  VIS     N LFFPAIQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
A0A5A7UYW0 Photosynthetic NDH subunit of subcomplex B 16.2e-1575.36Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVEIASLGLKL+G V+ C  VIS     N LFFPAIQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
A0A6J1CV27 photosynthetic NDH subunit of subcomplex B 1, chloroplastic6.2e-1575.36Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVEIASLGLKL+G V+ C  VIS     N LFFPAIQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
A0A6J1GNJ2 photosynthetic NDH subunit of subcomplex B 1, chloroplastic8.1e-1573.91Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVE+ASLGLKL+G V+ C  VIS     N LFFPAIQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
A0A6J1JXN2 photosynthetic NDH subunit of subcomplex B 1, chloroplastic1.8e-1473.91Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GYMVEIASLGLKL+G V+ C  VIS     N LFFP IQLL DRY GVQIDVVASAR KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
SwissProt top hitse value%identityAlignment
Q9S9N6 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic9.5e-1357.97Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GY VE+ASL LK++G V+ C  VIS     N LFFP IQL+ DRY GVQ+D++ + R KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
Arabidopsis top hitse value%identityAlignment
AT1G15980.1 NDH-dependent cyclic electron flow 16.8e-1457.97Show/hide
Query:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ
        PY FLKFP GY VE+ASL LK++G V+ C  VIS     N LFFP IQL+ DRY GVQ+D++ + R KQ
Subjt:  PYVFLKFP-GYMVEIASLGLKLQGYVQWCSRVISD---RNFLFFPAIQLLVDRYLGVQIDVVASARRKQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCTATGTGTTTTTGAAATTTCCTGGGTACATGGTGGAGATTGCCTCTTTGGGTCTAAAACTCCAGGGATATGTCCAGTGGTGCTCCCGCGTGATCTCCGACAGGAACTT
CCTTTTCTTTCCAGCCATTCAATTGCTCGTGGATCGGTATCTAGGAGTCCAAATTGATGTGGTGGCTTCGGCCAGGAGAAAACAG
mRNA sequenceShow/hide mRNA sequence
CCCTATGTGTTTTTGAAATTTCCTGGGTACATGGTGGAGATTGCCTCTTTGGGTCTAAAACTCCAGGGATATGTCCAGTGGTGCTCCCGCGTGATCTCCGACAGGAACTT
CCTTTTCTTTCCAGCCATTCAATTGCTCGTGGATCGGTATCTAGGAGTCCAAATTGATGTGGTGGCTTCGGCCAGGAGAAAACAG
Protein sequenceShow/hide protein sequence
PYVFLKFPGYMVEIASLGLKLQGYVQWCSRVISDRNFLFFPAIQLLVDRYLGVQIDVVASARRKQ