; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002888 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002888
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionX-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Genome locationscaffold359:490937..491560
RNA-Seq ExpressionMS002888
SyntenyMS002888
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583719.1 hypothetical protein SDJN03_19651, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3650.83Show/hide
Query:  DLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPL-------
        ++DS ESL+L     T  S+ V+RLK MVKF+VS+CVF LV+ALF S FS+FPHSFT+YFS  LFSLLNH ++R +MFL+CNGIL LLATS +       
Subjt:  DLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPL-------

Query:  ------------QHSNSIPHHHYEL-----------REEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEEGKRSE----
                      S+S+ H  +E             +E +E+E E+ +D+    H              E+E+DEGCFT+EVEEEEEEEE +  E    
Subjt:  ------------QHSNSIPHHHYEL-----------REEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEEGKRSE----

Query:  ELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV
        +LEVVVSTEELNKKIEEFIRKMKEEMRI+AA  Q QL+AV
Subjt:  ELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV

KAG7019366.1 hypothetical protein SDJN02_18326, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-3650.83Show/hide
Query:  QAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPL----
        +A ++DS ESL+L     T  S+ V+RLK MVKF+VS+CVF LV+ALF S FSLFPHSFT+YFS  LFSLLNH ++R +MFL+CNGIL LLATS +    
Subjt:  QAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPL----

Query:  ---------------QHSNSIPHHHYEL-----------REEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEEGKRS--
                         S+S+ H  +E             +E +E+E ED+ +D       +           E+E+DEGCFT+EVEEEEEEEE +    
Subjt:  ---------------QHSNSIPHHHYEL-----------REEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEEGKRS--

Query:  -EELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV
          +LEVVVSTEELNKKIEEFIRKMKEEMRI+AA  Q QL+AV
Subjt:  -EELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV

XP_022142572.1 nardilysin-like [Momordica charantia]3.5e-9898.09Show/hide
Query:  PQAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNS
        PQA+DLDSSESLNL GMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNS
Subjt:  PQAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNS

Query:  IPHHHYELREEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQ-AA
        IPHHHYELREEEKEEEVEDDDDDTSAIHSADLAAVGP+SPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQ AA
Subjt:  IPHHHYELREEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQ-AA

Query:  AAQTQLVAV
        AAQTQLVAV
Subjt:  AAQTQLVAV

XP_022927104.1 X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucurbita moschata]7.7e-3751.42Show/hide
Query:  QAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPL----
        +A ++DS ESL+L     TN  + V+RLK MVKF+VS+CVF LV+ALF S FSLFPHSFT+YFS  LFSLLNH ++R +MFL+CNGIL LLATS +    
Subjt:  QAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPL----

Query:  ----------------QHSNSIPHHHY------------------ELREEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEE
                          S+S+ H  +                  E   EE E+E ED+ +D       D           E+E+DEGCFT+EV EEEEE
Subjt:  ----------------QHSNSIPHHHY------------------ELREEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEE

Query:  EEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV
        EEGKR  +LEVVVSTEELNKKIEEFIRKMKEEMRI+AA  Q QL+AV
Subjt:  EEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV

XP_038877796.1 glutamic acid-rich protein-like [Benincasa hispida]4.1e-3852.24Show/hide
Query:  PQAQDLDSSESLNLV---GMCRT-----NWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLL
        P+A++LDS++SLNL       RT     N  SKV+ L  MVKF     VF LV+ALF S FSLFPHSF++YFS  +FSLLNHA++R YMFL+CNGIL LL
Subjt:  PQAQDLDSSESLNLV---GMCRT-----NWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLL

Query:  ATSPL---------------QHSNSIPHHHYELR------------EEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEE
        ATS +                +S+S  HHH++L             EE  ++  E+++++   IH  +L          E E+DEGCFTDEVE+++EEEE
Subjt:  ATSPL---------------QHSNSIPHHHYELR------------EEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEE

Query:  GKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV
        GKR  ELEVVVSTEELNKKIEEFIRKMKEEMRI+  AAQTQL+AV
Subjt:  GKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV

TrEMBL top hitse value%identityAlignment
A0A0A0LVQ2 Uncharacterized protein3.0e-1847.59Show/hide
Query:  NWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCN-GILLLLATSPLQHSNS---------IPH----H
        N SSKV+ LK MVK    + VFCL++ LF SLFSLFPHSF++YFS  LFS+L HA++R YMFL+CN GIL LLATS +  S+S          PH    H
Subjt:  NWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCN-GILLLLATSPLQHSNS---------IPH----H

Query:  HYELREEEKEEEV----EDDDDDTSAIHSADLAAVGPSSPIIEE-EDDEGCFTDEVEEEEEEE-EGKRSEELEVVVSTEELNKKIEE
        H+ L E +    V    E D D T          +     + EE E+DEGCFTDEVEEEEEEE EGK+  + E +  + E +++IE+
Subjt:  HYELREEEKEEEV----EDDDDDTSAIHSADLAAVGPSSPIIEE-EDDEGCFTDEVEEEEEEE-EGKRSEELEVVVSTEELNKKIEE

A0A1S3VGB0 uncharacterized protein LOC1067748827.8e-1139.71Show/hide
Query:  QRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNSIPHHHYELR---------------
        Q LK  ++FV+SV VF + V  + S FS+ P SF  YFS  LFS+  H LDR YMFL+CNGIL  +A   L +S+       E +               
Subjt:  QRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNSIPHHHYELR---------------

Query:  ---EEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEE--EEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQ
           +EE  EEV +D++      +    + G    I EEE  EG    EVE   ++E  E   +   E +++T+ELN+K EEFIRKMKEE+RI+   AQ Q
Subjt:  ---EEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEE--EEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQ

Query:  LVAV
        L+AV
Subjt:  LVAV

A0A6J1CN51 nardilysin-like1.7e-9898.09Show/hide
Query:  PQAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNS
        PQA+DLDSSESLNL GMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNS
Subjt:  PQAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNS

Query:  IPHHHYELREEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQ-AA
        IPHHHYELREEEKEEEVEDDDDDTSAIHSADLAAVGP+SPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQ AA
Subjt:  IPHHHYELREEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQ-AA

Query:  AAQTQLVAV
        AAQTQLVAV
Subjt:  AAQTQLVAV

A0A6J1EH25 X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like3.7e-3751.42Show/hide
Query:  QAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPL----
        +A ++DS ESL+L     TN  + V+RLK MVKF+VS+CVF LV+ALF S FSLFPHSFT+YFS  LFSLLNH ++R +MFL+CNGIL LLATS +    
Subjt:  QAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPL----

Query:  ----------------QHSNSIPHHHY------------------ELREEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEE
                          S+S+ H  +                  E   EE E+E ED+ +D       D           E+E+DEGCFT+EV EEEEE
Subjt:  ----------------QHSNSIPHHHY------------------ELREEEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEE

Query:  EEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV
        EEGKR  +LEVVVSTEELNKKIEEFIRKMKEEMRI+AA  Q QL+AV
Subjt:  EEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV

A0A6P3ZZX9 glutamic acid-rich protein-like4.4e-1438.67Show/hide
Query:  VGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNS------------
        V   +   +S +Q L+  ++  +SV +  L +  + S  SLFPHSF++YFS  LFS+   +L+R YMFL+CNGIL  LA S +  ++S            
Subjt:  VGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFS--LFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNS------------

Query:  -IPHHHYELREEEKEEEVEDDDDD------------TSAIHSADLAAVGPSSPIIEEE--DDEGCFTDEV--EEEEEEEEGKRSEELEVVVSTEELNKKI
         +P  +    EEE+EEE ED+D+D             S   S +   V   +  +E E  ++EG ++  +  E EE+E EG  +    VV ST+ELNKK 
Subjt:  -IPHHHYELREEEKEEEVEDDDDD------------TSAIHSADLAAVGPSSPIIEEE--DDEGCFTDEV--EEEEEEEEGKRSEELEVVVSTEELNKKI

Query:  EEFIRKMKEEMRIQAAAAQTQLVAV
        EEFIRKMKEE+RI+   AQ QL+AV
Subjt:  EEFIRKMKEEMRIQAAAAQTQLVAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G13130.1 unknown protein4.4e-0633.51Show/hide
Query:  KFVVSVCVFCLVVALFLSLFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLA--------TSPLQH-----SNSIPHHHYELREEEKEEEVEDD
        +F+  +  F  V    LSL  L  H F LY  +  L+ HA+D+NYMFLLCNG+++++A        + P++        +  +  +E      E E + D
Subjt:  KFVVSVCVFCLVVALFLSLFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLA--------TSPLQH-----SNSIPHHHYELREEEKEEEVEDD

Query:  DDDTSAIHSADLAAV------GPSSPIIEEEDDEGCFTDEVEEEE---------EEEEGKRSEELEVVVST-EELNKKIEEFIRKMKEEMRIQA
            +    A+   V        +    EE+DD+    D   EEE         EEEEG     + V+ ST EE+NKK +EFIRKMKEE+RI+A
Subjt:  DDDTSAIHSADLAAV------GPSSPIIEEEDDEGCFTDEVEEEE---------EEEEGKRSEELEVVVST-EELNKKIEEFIRKMKEEMRIQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCACAAGCCCAAGATTTGGATTCAAGTGAAAGTTTGAATCTTGTTGGGATGTGCAGAACAAATTGGAGCAGCAAAGTGCAGAGGTTGAAAGGGATGGTGAAGTTTGTAGT
GTCAGTTTGTGTGTTTTGTTTGGTTGTTGCCTTGTTTTTGTCCCTCTTCTCTCTCTTCCCCCATTCCTTCACTCTCTATTTCTCCCTCTTCTCTCTCCTCAACCATGCCT
TGGACAGAAACTACATGTTCTTGCTCTGCAATGGAATCCTCCTTCTCCTTGCCACCTCTCCTCTGCAACATTCTAATTCCATTCCCCACCATCACTATGAGCTTCGAGAA
GAAGAAAAAGAGGAGGAGGTGGAGGATGACGATGATGACACATCAGCAATTCATTCTGCTGACCTGGCAGCTGTGGGGCCCAGCAGCCCCATTATTGAAGAAGAAGATGA
TGAAGGGTGTTTTACAGATGAGGTGGAAGAAGAGGAAGAAGAAGAAGAAGGGAAGAGGAGTGAAGAATTGGAGGTGGTGGTGAGTACAGAAGAGTTGAACAAGAAAATTG
AAGAGTTTATAAGGAAGATGAAGGAGGAAATGAGGATTCAAGCAGCAGCAGCTCAAACTCAGCTTGTTGCAGTG
mRNA sequenceShow/hide mRNA sequence
CCACAAGCCCAAGATTTGGATTCAAGTGAAAGTTTGAATCTTGTTGGGATGTGCAGAACAAATTGGAGCAGCAAAGTGCAGAGGTTGAAAGGGATGGTGAAGTTTGTAGT
GTCAGTTTGTGTGTTTTGTTTGGTTGTTGCCTTGTTTTTGTCCCTCTTCTCTCTCTTCCCCCATTCCTTCACTCTCTATTTCTCCCTCTTCTCTCTCCTCAACCATGCCT
TGGACAGAAACTACATGTTCTTGCTCTGCAATGGAATCCTCCTTCTCCTTGCCACCTCTCCTCTGCAACATTCTAATTCCATTCCCCACCATCACTATGAGCTTCGAGAA
GAAGAAAAAGAGGAGGAGGTGGAGGATGACGATGATGACACATCAGCAATTCATTCTGCTGACCTGGCAGCTGTGGGGCCCAGCAGCCCCATTATTGAAGAAGAAGATGA
TGAAGGGTGTTTTACAGATGAGGTGGAAGAAGAGGAAGAAGAAGAAGAAGGGAAGAGGAGTGAAGAATTGGAGGTGGTGGTGAGTACAGAAGAGTTGAACAAGAAAATTG
AAGAGTTTATAAGGAAGATGAAGGAGGAAATGAGGATTCAAGCAGCAGCAGCTCAAACTCAGCTTGTTGCAGTG
Protein sequenceShow/hide protein sequence
PQAQDLDSSESLNLVGMCRTNWSSKVQRLKGMVKFVVSVCVFCLVVALFLSLFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNSIPHHHYELRE
EEKEEEVEDDDDDTSAIHSADLAAVGPSSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELEVVVSTEELNKKIEEFIRKMKEEMRIQAAAAQTQLVAV