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MS002909 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002909
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionFAS1 domain-containing protein
Genome locationscaffold359:587160..587618
RNA-Seq ExpressionMS002909
SyntenyMS002909
Gene Ontology termsNA
InterPro domainsIPR000782 - FAS1 domain
IPR036378 - FAS1 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463608.1 PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis melo]3.6e-5273.61Show/hide
Query:  LTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVH
        L + S S   N+TDL+AAIEDM+A+SFYGFAILLQMLN TTQL L++ITFFIP+D+QLSNISIAV  LEAFV SH I MPLQFSDLIRFPTGS+VPSG H
Subjt:  LTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVH

Query:  NRMIRVHNHGRAHFLVNNAEVTVPNVCATHT-VKCHGVNRVIDY
        NRMIR+HN+GR HF+VNNA V VPNVC++   +KCHGVN+VI+Y
Subjt:  NRMIRVHNHGRAHFLVNNAEVTVPNVCATHT-VKCHGVNRVIDY

XP_011648466.2 FAS1 domain-containing protein SELMODRAFT_448915, partial [Cucumis sativus]8.1e-5271.24Show/hide
Query:  LSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPT
        L ++  AA++ SS  S   N+TDL+AAIEDM+A+SFYGFAILLQMLN TTQL L++ITFFIP+D Q+SNISIAV RLEAFV SH I MPLQFSDLIRFPT
Subjt:  LSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPT

Query:  GSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHT-VKCHGVNRVIDY
        GS+VPSG HNRMIR+HN+GR HF+VNNA V VPNVC++   +KCHGVN+VI+Y
Subjt:  GSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHT-VKCHGVNRVIDY

XP_022142639.1 uncharacterized protein LOC111012702 [Momordica charantia]1.7e-78100Show/hide
Query:  LLSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFP
        LLSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFP
Subjt:  LLSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFP

Query:  TGSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVIDY
        TGSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVIDY
Subjt:  TGSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVIDY

XP_023520235.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita pepo subsp. pepo]4.4e-5074.64Show/hide
Query:  SSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRV
        S   N T+L AA+ DMRA+SFYGFAILLQMLNATTQL LRDITFFIP D QLSNISI+  RLE+FV SH I MPLQFSDLIRFPTGS+VPSG  NRMIR+
Subjt:  SSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRV

Query:  HNHGRAHFLVNNAEVTVPNVC-ATHTVKCHGVNRVIDY
        HNHGR HFLVNNA VTVPNVC ++  +KCHG+++V+DY
Subjt:  HNHGRAHFLVNNAEVTVPNVC-ATHTVKCHGVNRVIDY

XP_038893487.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Benincasa hispida]3.3e-5372.55Show/hide
Query:  LSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPT
        L S+  A  + SS  +   N TDL+AAIEDM+AKSFYGFAILLQMLN TTQL L++ITFFIP+D QLSNISIAV RLEAFV SH I MPL+FSDLIRFPT
Subjt:  LSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPT

Query:  GSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVC-ATHTVKCHGVNRVIDY
        GS+VPSG HNRMIR+HNHGR HF+VNNA V VPNVC ++ ++KCHGVN+VIDY
Subjt:  GSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVC-ATHTVKCHGVNRVIDY

TrEMBL top hitse value%identityAlignment
A0A1S3CJM9 FAS1 domain-containing protein SELMODRAFT_448915-like1.8e-5273.61Show/hide
Query:  LTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVH
        L + S S   N+TDL+AAIEDM+A+SFYGFAILLQMLN TTQL L++ITFFIP+D+QLSNISIAV  LEAFV SH I MPLQFSDLIRFPTGS+VPSG H
Subjt:  LTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVH

Query:  NRMIRVHNHGRAHFLVNNAEVTVPNVCATHT-VKCHGVNRVIDY
        NRMIR+HN+GR HF+VNNA V VPNVC++   +KCHGVN+VI+Y
Subjt:  NRMIRVHNHGRAHFLVNNAEVTVPNVCATHT-VKCHGVNRVIDY

A0A5D3E4N2 FAS1 domain-containing protein2.2e-3975.23Show/hide
Query:  MLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHT-VKC
        MLN TTQL L++ITFFIP+D+QLSNISIAV  LEAFV SH I MPLQFSDLIRFPTGS+VPSG HNRMIR+HN+GR HF+VNNA V VPNVC++   +KC
Subjt:  MLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHT-VKC

Query:  HGVNRVIDY
        HGVN+VI+Y
Subjt:  HGVNRVIDY

A0A6J1CM20 uncharacterized protein LOC1110127028.4e-79100Show/hide
Query:  LLSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFP
        LLSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFP
Subjt:  LLSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFP

Query:  TGSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVIDY
        TGSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVIDY
Subjt:  TGSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVIDY

A0A6J1EI57 FAS1 domain-containing protein SELMODRAFT_448915-like3.7e-5074.64Show/hide
Query:  SSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRV
        S   N T+L AA+ DMRA+SFYGFAILLQMLNATTQL LRDITFFIP D QLSNISI   RLE+FV SH I MPLQFSDLIRFPTGS+VPSG  NRMIR+
Subjt:  SSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRV

Query:  HNHGRAHFLVNNAEVTVPNVC-ATHTVKCHGVNRVIDY
        HNHGR HFLVNNA VTVPNVC ++  +KCHG+++V+DY
Subjt:  HNHGRAHFLVNNAEVTVPNVC-ATHTVKCHGVNRVIDY

A0A6J1KFG1 FAS1 domain-containing protein SELMODRAFT_448915-like1.4e-4973.91Show/hide
Query:  SSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRV
        S   N T+L AA+ DMRA+SFYGFAILLQMLNATTQL LRDITFFIP D QLSNISI    LE+FV SH I MPLQFSDLIRFPTGS+VPSG  NRMIR+
Subjt:  SSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRV

Query:  HNHGRAHFLVNNAEVTVPNVCATH-TVKCHGVNRVIDY
        HNHGR HFLVNNA VT+PNVC++   +KCHG+++VIDY
Subjt:  HNHGRAHFLVNNAEVTVPNVCATH-TVKCHGVNRVIDY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G16920.1 Fasciclin-like arabinogalactan family protein4.8e-1831.29Show/hide
Query:  LTSSSHSSN----PNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQL--SNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSM
        +TSS+ +      PN  +L  AIE+M   +++ F +L+ ML +     L ++TF +P+D  L  SNI      +  F+  H I   L F  L   P GS+
Subjt:  LTSSSHSSN----PNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQL--SNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSM

Query:  VPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVI
        VPS + +  + + N GR+++ +NN ++   N+C+  ++KCHG++ ++
Subjt:  VPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVI

AT5G26730.1 Fasciclin-like arabinogalactan family protein1.7e-2338.52Show/hide
Query:  NPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRVHN
        N N+TDL +A+ DMR +S+ GF ILL+ LN T      DITF +P D  +S+  I    LE F+  H I   L  + ++ FP  ++VP    +RM  +  
Subjt:  NPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVHNRMIRVHN

Query:  HGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVIDY
         G +   VNNA +  PNVC    + CHG++ VI +
Subjt:  HGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVIDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGCTGTCGAGCCTCTGTCAAGCAGCGACATTAACGTCGTCGTCCCATAGCTCGAACCCGAACCGCACCGATCTCGAAGCTGCCATCGAAGACATGAGGGCCAAATCCTT
CTACGGCTTCGCCATCCTTCTCCAAATGCTGAATGCCACCACGCAGCTGGCCCTGCGGGACATCACCTTCTTCATCCCCCGCGATGCTCAGCTCTCGAACATCTCGATCG
CCGTGGGGCGCCTCGAGGCGTTCGTGTTCAGCCATTTCATCGCAATGCCGCTGCAGTTCTCCGACCTGATACGCTTTCCGACGGGATCCATGGTCCCCTCGGGCGTGCAC
AACAGGATGATCAGAGTGCATAACCATGGACGAGCACACTTTCTTGTGAACAATGCTGAAGTCACTGTTCCTAATGTTTGTGCTACTCACACTGTTAAGTGCCATGGAGT
TAATAGGGTCATTGATTAT
mRNA sequenceShow/hide mRNA sequence
CTGCTGTCGAGCCTCTGTCAAGCAGCGACATTAACGTCGTCGTCCCATAGCTCGAACCCGAACCGCACCGATCTCGAAGCTGCCATCGAAGACATGAGGGCCAAATCCTT
CTACGGCTTCGCCATCCTTCTCCAAATGCTGAATGCCACCACGCAGCTGGCCCTGCGGGACATCACCTTCTTCATCCCCCGCGATGCTCAGCTCTCGAACATCTCGATCG
CCGTGGGGCGCCTCGAGGCGTTCGTGTTCAGCCATTTCATCGCAATGCCGCTGCAGTTCTCCGACCTGATACGCTTTCCGACGGGATCCATGGTCCCCTCGGGCGTGCAC
AACAGGATGATCAGAGTGCATAACCATGGACGAGCACACTTTCTTGTGAACAATGCTGAAGTCACTGTTCCTAATGTTTGTGCTACTCACACTGTTAAGTGCCATGGAGT
TAATAGGGTCATTGATTAT
Protein sequenceShow/hide protein sequence
LLSSLCQAATLTSSSHSSNPNRTDLEAAIEDMRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPLQFSDLIRFPTGSMVPSGVH
NRMIRVHNHGRAHFLVNNAEVTVPNVCATHTVKCHGVNRVIDY