CuGenDBv2

Gene ID	MS002940
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Trigger factor-like isoform X1
Genome location	scaffold595_1:194352..199183
RNA-Seq Expression	MS002940
Synteny	MS002940
Gene Ontology terms	GO:0000413 - protein peptidyl-prolyl isomerization (biological process) GO:0015031 - protein transport (biological process) GO:0043335 - protein unfolding (biological process) GO:0051083 - 'de novo' cotranslational protein folding (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR005215 - Trigger factor IPR008881 - Trigger factor, ribosome-binding, bacterial IPR036611 - Trigger factor ribosome-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022155448.1 uncharacterized protein LOC111022592 isoform X1 [Momordica charantia]

2.8e-94

97.4

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

XP_022155449.1 uncharacterized protein LOC111022592 isoform X2 [Momordica charantia]

2.0e-92

96.88

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEK EALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

XP_022155450.1 uncharacterized protein LOC111022592 isoform X3 [Momordica charantia]

2.6e-92

96.88

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLS DVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

XP_022155452.1 uncharacterized protein LOC111022592 isoform X4 [Momordica charantia]

1.6e-92

96.88

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISL RSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

XP_022155453.1 uncharacterized protein LOC111022592 isoform X5 [Momordica charantia]

1.5e-90

96.35

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISL RSNRFLPAACAVLS DVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DMG6 uncharacterized protein LOC111022592 isoform X3

1.3e-92

96.88

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLS DVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

A0A6J1DMZ5 uncharacterized protein LOC111022592 isoform X1

1.4e-94

97.4

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

A0A6J1DN00 uncharacterized protein LOC111022592 isoform X5

7.0e-91

96.35

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISL RSNRFLPAACAVLS DVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

A0A6J1DPD9 uncharacterized protein LOC111022592 isoform X4

7.5e-93

96.88

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISL RSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

A0A6J1DQB1 uncharacterized protein LOC111022592 isoform X2

9.8e-93

96.88

Show/hide

Query:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
        IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA
Subjt:  IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEA

Query:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
        QPIPGFRRVKGG    +IPRDILLEILGPSRVYKQVIKKVINSTVAAYVEK EALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
Subjt:  QPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

SwissProt top hits

e value

%identity

Alignment

B1XL18 Trigger factor

1.3e-04

24.37

Show/hide

Query:  ELKIRVEVSGTKTRAIFNNVFDEMVAEAQPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLED
        ++ + +EV    T+  +++   ++ A    +PGFR+ K       +P+ IL++ LGP+R+   V++ +I+ ++ A +  QE ++   + +++ S++DL  
Subjt:  ELKIRVEVSGTKTRAIFNNVFDEMVAEAQPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLED

Query:  QFEPDENFFFDAIIQLNKT
         ++P E   F A + +  T
Subjt:  QFEPDENFFFDAIIQLNKT

Q8DLI3 Trigger factor

1.9e-08

32.77

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Query:  VTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEAQPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRI
        +T+    N +L   +EVSGT ++ ++N V ++++   Q +PGFR+ K        PR ++L+ LG  R+    ++K+I   V   VEK     +G +L +
Subjt:  VTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEAQPIPGFRRVKGGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRI

Query:  EQSYEDLEDQFEPDENFFF
             +L DQF P ENF F
Subjt:  EQSYEDLEDQFEPDENFFF

Arabidopsis top hits

e value

%identity

Alignment

AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

1.8e-38

55.49

Show/hide

Query:  RKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNE-NRELKIRVEVSGTKTRAIFNNVFDEMVAEAQPIPGFRRVKGGNVESHIPRDILLEILG
        +K+    +NR   A CA  S DV  SS   E   +T    E + E+K+ V+VSG KT+ +FN+VF++MVA AQPIPGFRRVKGG    +IP+D+LLEILG
Subjt:  RKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNE-NRELKIRVEVSGTKTRAIFNNVFDEMVAEAQPIPGFRRVKGGNVESHIPRDILLEILG

Query:  PSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
         S+VYKQVIKK+INS +  YV KQE LKVGK+L + QSYEDLE+ FEP E+F FDA I+L + +
Subjt:  PSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

1.8e-38

55.49

Show/hide

Query:  RKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNE-NRELKIRVEVSGTKTRAIFNNVFDEMVAEAQPIPGFRRVKGGNVESHIPRDILLEILG
        +K+    +NR   A CA  S DV  SS   E   +T    E + E+K+ V+VSG KT+ +FN+VF++MVA AQPIPGFRRVKGG    +IP+D+LLEILG
Subjt:  RKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNE-NRELKIRVEVSGTKTRAIFNNVFDEMVAEAQPIPGFRRVKGGNVESHIPRDILLEILG

Query:  PSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN
         S+VYKQVIKK+INS +  YV KQE LKVGK+L + QSYEDLE+ FEP E+F FDA I+L + +
Subjt:  PSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

Sequences

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CDS sequence

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ATATATCATAAGCAGACAGCAGATTGCTTTACTCCAAGCCTCACCTGCACAAGTGTGTCTTTTCCAAGTCAAATAGTATACAGTAGCAGAAAAATTTCTTTGAGTAGAAG
TAACAGATTTCTTCCAGCTGCTTGTGCTGTGTTATCAGAAGATGTGAGTGTTTCTTCTTCTCAGTTTGAAGACTTCTCTGTCACTAGTGCTCTCAATGAGAATAGAGAAC
TAAAGATTCGTGTAGAGGTGTCCGGTACCAAAACTCGAGCAATTTTCAACAATGTTTTTGATGAAATGGTTGCTGAAGCCCAGCCTATTCCAGGTTTTCGAAGAGTGAAA
GGAGGTAATGTCGAGAGCCATATACCCAGAGACATTCTATTAGAGATACTAGGACCTTCTAGGGTGTACAAGCAAGTTATCAAGAAAGTTATCAACTCTACTGTTGCTGC
ATATGTGGAAAAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGAGCAAAGCTATGAGGATCTTGAAGATCAGTTTGAACCAGATGAAAATTTCTTTTTTGATG
CCATTATTCAGCTCAACAAAACAAAC

mRNA sequence

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Protein sequence

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IYHKQTADCFTPSLTCTSVSFPSQIVYSSRKISLSRSNRFLPAACAVLSEDVSVSSSQFEDFSVTSALNENRELKIRVEVSGTKTRAIFNNVFDEMVAEAQPIPGFRRVK
GGNVESHIPRDILLEILGPSRVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDENFFFDAIIQLNKTN

MS002940 (gene) of Bitter gourd (TR) v1 genome