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MS002943 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002943
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing family protein
Genome locationscaffold595_1:213750..214009
RNA-Seq ExpressionMS002943
SyntenyMS002943
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9861710.1 hypothetical protein H0E87_012824 [Populus deltoides]5.3e-0844.33Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+GSG  I +  TLLD L  N ++E+ LEILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

KAF9861711.1 hypothetical protein H0E87_012824 [Populus deltoides]5.3e-0844.33Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+GSG  I +  TLLD L  N ++E+ LEILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

KAG6786927.1 hypothetical protein POTOM_008547 [Populus tomentosa]5.3e-0844.33Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+GSG  I +  TLLD L  N ++E+ LEILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

XP_011025376.1 PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Populus euphratica]5.3e-0844.33Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+GSG  I +  TLLD L  N ++E+ LEILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

XP_022157802.1 pentatricopeptide repeat-containing protein At1g05600 [Momordica charantia]5.3e-0841.41Show/hide
Query:  EPLGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVR------------LFILNPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        + L Q+ + +LALHIFQ +D   CY N+ SY IL++              + +   RISQRGSG  I +  TLL  L  N ++EQ +EILG+I   GLK
Subjt:  EPLGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVR------------LFILNPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

TrEMBL top hitse value%identityAlignment
A0A2K2BKH4 Uncharacterized protein4.4e-0843.3Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+GSG  I +  TLLD L  N ++E+ +EILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

A0A4U5PX12 Pentatricopeptide repeat-containing family protein2.6e-0844.33Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+GSG  I +  TLLD L  N ++E+ LEILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

A0A5N5NNS3 Uncharacterized protein2.6e-0844.33Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+GSG  I +  TLLD L  N ++E+ LEILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

A0A6J1DVG7 pentatricopeptide repeat-containing protein At1g056002.6e-0841.41Show/hide
Query:  EPLGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVR------------LFILNPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        + L Q+ + +LALHIFQ +D   CY N+ SY IL++              + +   RISQRGSG  I +  TLL  L  N ++EQ +EILG+I   GLK
Subjt:  EPLGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVR------------LFILNPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

A0A6N2L9A7 Uncharacterized protein2.6e-0844.33Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+GSG  I +  TLLD L  N ++E+ LEILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

SwissProt top hitse value%identityAlignment
Q9SYK1 Pentatricopeptide repeat-containing protein At1g056001.8e-0636.08Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q  R  LA  +FQ ++   CY ++ SY IL++ F L            +   RISQ+GSG  I +   LLD L    +++  +EILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

Arabidopsis top hitse value%identityAlignment
AT1G05600.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.3e-0736.08Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q  R  LA  +FQ ++   CY ++ SY IL++ F L            +   RISQ+GSG  I +   LLD L    +++  +EILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

AT1G05600.2 Tetratricopeptide repeat (TPR)-like superfamily protein1.3e-0736.08Show/hide
Query:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK
        L Q  R  LA  +FQ ++   CY ++ SY IL++ F L            +   RISQ+GSG  I +   LLD L    +++  +EILG+I   GLK
Subjt:  LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGCCTCTTGGCCAAAAAGGTCGATATAAGCTTGCTCTGCATATCTTTCAACCAATCGACAAACCGGATTGCTATACTAACAAGCAAAGTTATTCTATTTTAGTGAGGCT
ATTCATTTTGAATCCATGTCCACGAATTTCTCAGAGGGGTAGTGGTGCGGGCATTTTGTCAAACACCCTTTTGGATGGTCTATATGTTAATAGAAAGATCGAGCAGGTTC
TGGAAATACTTGGTCAGATCTATATGAATGGACTAAAG
mRNA sequenceShow/hide mRNA sequence
GAGCCTCTTGGCCAAAAAGGTCGATATAAGCTTGCTCTGCATATCTTTCAACCAATCGACAAACCGGATTGCTATACTAACAAGCAAAGTTATTCTATTTTAGTGAGGCT
ATTCATTTTGAATCCATGTCCACGAATTTCTCAGAGGGGTAGTGGTGCGGGCATTTTGTCAAACACCCTTTTGGATGGTCTATATGTTAATAGAAAGATCGAGCAGGTTC
TGGAAATACTTGGTCAGATCTATATGAATGGACTAAAG
Protein sequenceShow/hide protein sequence
EPLGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFILNPCPRISQRGSGAGILSNTLLDGLYVNRKIEQVLEILGQIYMNGLK