; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS002945 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002945
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionselenoprotein F
Genome locationscaffold595_1:234154..237455
RNA-Seq ExpressionMS002945
SyntenyMS002945
Gene Ontology termsGO:0005788 - endoplasmic reticulum lumen (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR014912 - Selenoprotein F/M domain
IPR036249 - Thioredoxin-like superfamily
IPR038219 - Selenoprotein F/M, thioredoxin-like domain superfamily
IPR039992 - Selenoprotein F/M


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592972.1 Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia]2.6e-7583.63Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        M + TDVK+PA      A A AIIFIAS+PLAWSKE L  RECEDLGFTGLALCSDC+TLAEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIE+EKD+FP+VK+QYIFNSPPKL LLDDEGQ KESIRIDNWKREHILQFLQ+KVK SSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

XP_008460012.1 PREDICTED: 15 kDa selenoprotein [Cucumis melo]1.5e-7584.21Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        M +L  V  PA A T   AA AIIFI+S+PLAWSKE L  RECEDLGFTGLALCSDC+TLAEYIKDQEL++DCLKCCAEDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIE++KDQFP+VKVQY FNSPPKL+LLDDEGQ KESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

XP_022155407.1 selenoprotein F [Momordica charantia]4.9e-9099.42Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        ML+LTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

XP_023513576.1 selenoprotein F-like [Cucurbita pepo subsp. pepo]1.2e-7584.21Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        M V TDVK+PA      A A AIIFIAS+PLAWSKE L  RECEDLGFTGLALCSDC+TLAEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIE+EKD+FP+VK+QYIFNSPPKL LLDDEGQ KESIRIDNWKREHILQFLQ+KVK SSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

XP_038875398.1 selenoprotein F [Benincasa hispida]8.1e-7784.8Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        M +L  V+ PA A T   AA  +IFIAS+PLAWSKE L  RECEDLGFTGLALCSDC+TLAEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIE+EKDQFP+VKVQYIFNSPPKL+LLDDEGQ KESIRIDNWKREHILQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

TrEMBL top hitse value%identityAlignment
A0A0A0KA30 Sep15_SelM domain-containing protein4.1e-7483.04Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        M +L  V   A A T    A AIIFI+S+PL WSKE L  RECEDLGFTGLALCSDC+TLAEYIKDQEL+SDCLKCCAEDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIED+KDQFP+VKVQY FNSPPKL+LLDD+GQ KESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

A0A1S3CC00 15 kDa selenoprotein7.4e-7684.21Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        M +L  V  PA A T   AA AIIFI+S+PLAWSKE L  RECEDLGFTGLALCSDC+TLAEYIKDQEL++DCLKCCAEDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIE++KDQFP+VKVQY FNSPPKL+LLDDEGQ KESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

A0A6J1DP91 selenoprotein F2.4e-9099.42Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        ML+LTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

A0A6J1HA08 selenoprotein F-like2.8e-7583.04Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        M +  DVKKPA      A A AIIF+AS+PLAWSKE L  RECEDLGFTGLALCSDC+TLAEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIE+EKD+FP+VK+QYIFNSPPKL LLDDEGQ KESIRIDNWKREHILQFLQ+KVK SSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

A0A6J1KPJ2 selenoprotein F-like2.8e-7583.63Show/hide
Query:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR
        M +  DVKKPA      A   AIIFIAS+PLAWSKE L  RECEDLGFTGLALCSDC+TLAEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMR
Subjt:  MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMR

Query:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIE+EKD+FP+VKVQYIFNSPPKL LLDDEGQ KESIRIDNWKREHILQFLQ+KVK SSAI
Subjt:  KLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

SwissProt top hitse value%identityAlignment
A1Z623 Selenoprotein F1.5e-1734.23Show/hide
Query:  AVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-
        A A+  +++    +S E      C +LGF+   LC  C+ L ++   Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + 
Subjt:  AVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-

Query:  FPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKR
        F  ++++Y+  S P L LLDD G   E + I  W  + + +FL EK++R
Subjt:  FPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKR

O60613 Selenoprotein F6.8e-1837.3Show/hide
Query:  CEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEG
        C +LGF+   LCS C+ L ++    +L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  ++++Y+  S P L LLDD G
Subjt:  CEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEG

Query:  QQKESIRIDNWKREHILQFLQEKVKR
           E + I  W  + + +FL EK++R
Subjt:  QQKESIRIDNWKREHILQFLQEKVKR

Q802F3 Selenoprotein F2.6e-1735.88Show/hide
Query:  LGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVL
        L    C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LEVC  KL  +P++  F+  +K + F  ++++Y+  S P L L
Subjt:  LGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVL

Query:  LDDEGQQKESIRIDNWKREHILQFLQEKVKR
        LDD G   E + I  W  + + +FL EK++R
Subjt:  LDDEGQQKESIRIDNWKREHILQFLQEKVKR

Q923V8 Selenoprotein F1.7e-1636.51Show/hide
Query:  CEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEG
        C +LGF+   LCS C+ L ++     L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  ++++Y+  S P L LLDD G
Subjt:  CEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEG

Query:  QQKESIRIDNWKREHILQFLQEKVKR
           E + I  W  + + +FL EK++R
Subjt:  QQKESIRIDNWKREHILQFLQEKVKR

Q9ERR7 Selenoprotein F1.7e-1636.51Show/hide
Query:  CEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEG
        C +LGF+   LCS C+ L ++     L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  ++++Y+  S P L LLDD G
Subjt:  CEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEG

Query:  QQKESIRIDNWKREHILQFLQEKVKR
           E + I  W  + + +FL EK++R
Subjt:  QQKESIRIDNWKREHILQFLQEKVKR

Arabidopsis top hitse value%identityAlignment
AT1G05720.1 selenoprotein family protein5.5e-6367.68Show/hide
Query:  VKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYP
        +K+   A   V +A+ I+ +AS   A  KE L  +ECEDLGF+GLALCSDC++L+EY+KDQEL+SDCLKCCA+DS+D+ SK+TYSGA+LEVCMRKLVFYP
Subjt:  VKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYP

Query:  EIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSA
        EIVGFIE+EK++FP+VKVQYIFNSPPKL++LD++G+ KESIRIDNWKREH+LQ+++EKVK ++A
Subjt:  EIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGTTCTCACCGATGTAAAGAAGCCGGCTCCGGCGACGACGGCGGTGGCGGCGGCGGTGGCGATCATTTTTATCGCTTCAATTCCGCTGGCTTGGTCAAAGGAGCT
ACTCGGCCCGAGGGAATGTGAGGATCTAGGCTTCACAGGCCTTGCTCTCTGCTCTGATTGCAACACTTTAGCTGAATATATCAAAGATCAAGAACTAATATCAGACTGTT
TGAAGTGTTGCGCGGAGGATTCTGATGATGCCACGAGCAAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAACTAGTTTTCTATCCTGAAATTGTTGGC
TTCATTGAAGATGAAAAGGATCAATTCCCTACTGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGGTCTTGCTGGATGATGAGGGTCAACAGAAAGAAAGCAT
CAGGATTGACAATTGGAAACGTGAACATATATTGCAGTTTCTGCAAGAGAAGGTTAAGCGTTCTTCAGCAATT
mRNA sequenceShow/hide mRNA sequence
ATGCTGGTTCTCACCGATGTAAAGAAGCCGGCTCCGGCGACGACGGCGGTGGCGGCGGCGGTGGCGATCATTTTTATCGCTTCAATTCCGCTGGCTTGGTCAAAGGAGCT
ACTCGGCCCGAGGGAATGTGAGGATCTAGGCTTCACAGGCCTTGCTCTCTGCTCTGATTGCAACACTTTAGCTGAATATATCAAAGATCAAGAACTAATATCAGACTGTT
TGAAGTGTTGCGCGGAGGATTCTGATGATGCCACGAGCAAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAACTAGTTTTCTATCCTGAAATTGTTGGC
TTCATTGAAGATGAAAAGGATCAATTCCCTACTGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGGTCTTGCTGGATGATGAGGGTCAACAGAAAGAAAGCAT
CAGGATTGACAATTGGAAACGTGAACATATATTGCAGTTTCTGCAAGAGAAGGTTAAGCGTTCTTCAGCAATT
Protein sequenceShow/hide protein sequence
MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVG
FIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI