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MS002952 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002952
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCiliary neurotrophic factor
Genome locationscaffold595_1:323702..324553
RNA-Seq ExpressionMS002952
SyntenyMS002952
Gene Ontology termsGO:0005783 - endoplasmic reticulum (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592966.1 hypothetical protein SDJN03_12442, partial [Cucurbita argyrosperma subsp. sororia]5.7e-5267.76Show/hide
Query:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK
        ME+EQRL+LI LAI RL+D EN NK+SSDRS + D DE  DRTLL +LLSQIESLKE TESEE+ SA+D  K+KAKNS  ++  DD+  SRE+IV+ELKK
Subjt:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK

Query:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
        VKRQN++T CL+SVMIVVTVVWQLSEVSI+LN+KD+I+HPFR LGS +SG LKRPKTIVE    NS KQ+HDE ++LP +++P
Subjt:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP

XP_004140639.1 uncharacterized protein LOC101222559 [Cucumis sativus]1.4e-5872.38Show/hide
Query:  EEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKKV
        EEEQRLELI+ AIRRL+  +N NKKSSDRSSV D DE  + +LLR+LLSQIESLKE TESEE+ SA+DT KTK ++S++EEIVDDEC SRE++V+ELKK+
Subjt:  EEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKKV

Query:  KRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVEL
        KRQNL+THCLLSVMIV+TVVWQLSEVSIILN+KDKI+HPFRSLG+F+SG+ +RPKTIV++T+K SSKQDHDE ++LP +++
Subjt:  KRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVEL

XP_008459843.1 PREDICTED: uncharacterized protein LOC103498843 [Cucumis melo]1.6e-5971.58Show/hide
Query:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK
        MEEEQRLELI+ AI+RL+ E+N NKKSSDRSSV D DE  + +LLR+LLSQIESLKE TES+E  SA+DT KTK ++ ++EEIVDDEC SRE+IV+ELKK
Subjt:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK

Query:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
        +KRQNL+THCLLSVMIV+T+VWQLSEVSIILN+KDKI+HPFRSLG+F+SG+ KRPKTIV++T+KNSS+QD+DE ++LP +++P
Subjt:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP

XP_022155422.1 uncharacterized protein LOC111022569 [Momordica charantia]2.2e-8899.45Show/hide
Query:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK
        MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEE ESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK
Subjt:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK

Query:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
        VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
Subjt:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP

XP_038874574.1 uncharacterized protein LOC120067172 [Benincasa hispida]6.5e-6475.96Show/hide
Query:  EEEQRLELINLAIRRLIDEE-NNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK
        EEEQRLELI+LAIRRL++E+ N NKKSSDRSS+ D DE ++RTLLR+LLSQIESLKE TESEE  S +DT KTK ++SV+EEIVDDEC SRE+IV+ELKK
Subjt:  EEEQRLELINLAIRRLIDEE-NNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK

Query:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
        +KRQNL+THCLLSVMI+VTVVWQLSEVSIILN+KDKI+HPF+SLG+ +SG+LKRPKTIV++TEKNSSKQDHDE +VLP +++P
Subjt:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP

TrEMBL top hitse value%identityAlignment
A0A0A0K9P4 Uncharacterized protein6.8e-5972.38Show/hide
Query:  EEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKKV
        EEEQRLELI+ AIRRL+  +N NKKSSDRSSV D DE  + +LLR+LLSQIESLKE TESEE+ SA+DT KTK ++S++EEIVDDEC SRE++V+ELKK+
Subjt:  EEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKKV

Query:  KRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVEL
        KRQNL+THCLLSVMIV+TVVWQLSEVSIILN+KDKI+HPFRSLG+F+SG+ +RPKTIV++T+K SSKQDHDE ++LP +++
Subjt:  KRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVEL

A0A1S3CAM6 uncharacterized protein LOC1034988438.0e-6071.58Show/hide
Query:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK
        MEEEQRLELI+ AI+RL+ E+N NKKSSDRSSV D DE  + +LLR+LLSQIESLKE TES+E  SA+DT KTK ++ ++EEIVDDEC SRE+IV+ELKK
Subjt:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK

Query:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
        +KRQNL+THCLLSVMIV+T+VWQLSEVSIILN+KDKI+HPFRSLG+F+SG+ KRPKTIV++T+KNSS+QD+DE ++LP +++P
Subjt:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP

A0A5A7T973 Uncharacterized protein8.0e-6071.58Show/hide
Query:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK
        MEEEQRLELI+ AI+RL+ E+N NKKSSDRSSV D DE  + +LLR+LLSQIESLKE TES+E  SA+DT KTK ++ ++EEIVDDEC SRE+IV+ELKK
Subjt:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK

Query:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
        +KRQNL+THCLLSVMIV+T+VWQLSEVSIILN+KDKI+HPFRSLG+F+SG+ KRPKTIV++T+KNSS+QD+DE ++LP +++P
Subjt:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP

A0A6J1DPA5 uncharacterized protein LOC1110225691.1e-8899.45Show/hide
Query:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK
        MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEE ESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK
Subjt:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKK

Query:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
        VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
Subjt:  VKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP

A0A6J1KTZ8 uncharacterized protein LOC1114976202.0e-5063.82Show/hide
Query:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESL------------KEETESEEVESAVDTWKTKAKNSVREEIVDD--
        ME+EQRLELI LAI RL+D EN NK+SSDRS + D DE  DRTLL +LLSQIESL            KE TESEE+ SA+D  K K+KNSV+EEI DD  
Subjt:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESL------------KEETESEEVESAVDTWKTKAKNSVREEIVDD--

Query:  --ECSSREEIVRELKKVKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP
          E  S+E+IV+ELKKVKRQN++T CL+SVMIVVTVVWQLSEVSI+LN+KD+I+HPFR LGS +SG LKRPKTI+E    NS KQ+HDE ++LP +++P
Subjt:  --ECSSREEIVRELKKVKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27300.1 unknown protein8.8e-1936.07Show/hide
Query:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESL----KEET----ESEEVESAVDTWKTKAKNSVREEIVDDECSSRE
        ME  + +E ++ AI +L+ E+   + S D       ++ DD+  L +L+SQ+ES     KE+     E E+ E + D+  +K K+  + ++ +    S E
Subjt:  MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESL----KEET----ESEEVESAVDTWKTKAKNSVREEIVDDECSSRE

Query:  EIVRELKKVKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILK---RP-KTIVESTEKNSSKQDH
        EI +++KKVK+QN +TH LLS  I++T+VWQLSE S+I  +KD+I+HP RS+G  L+G+ K   RP K  +  T  ++ + +H
Subjt:  EIVRELKKVKRQNLVTHCLLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILK---RP-KTIVESTEKNSSKQDH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGAGCAACGCCTGGAGCTGATCAACCTCGCCATTAGAAGGCTAATTGACGAAGAGAACAACAACAAAAAATCCTCTGATCGGAGCTCCGTCGGCGATCGCGA
TGAACCCGACGACCGGACTCTCCTCCGCAACTTACTCTCTCAGATTGAATCACTGAAAGAAGAAACAGAATCTGAGGAGGTAGAATCTGCGGTAGATACTTGGAAAACAA
AAGCTAAAAATTCTGTTAGAGAGGAAATTGTTGATGATGAGTGTAGTAGTAGAGAAGAAATTGTTAGAGAGCTGAAGAAGGTGAAGAGGCAAAACCTTGTAACTCACTGT
CTTCTCTCAGTGATGATTGTGGTCACTGTTGTCTGGCAGCTTTCTGAGGTCTCCATTATCTTGAATATAAAAGATAAAATCAACCATCCCTTTAGATCCTTGGGCAGTTT
TCTCTCAGGAATTCTGAAACGCCCTAAAACCATTGTTGAGAGTACAGAGAAGAATTCATCAAAACAAGACCATGATGAAACTGCAGTGCTTCCTCATGTGGAATTGCCA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGAGCAACGCCTGGAGCTGATCAACCTCGCCATTAGAAGGCTAATTGACGAAGAGAACAACAACAAAAAATCCTCTGATCGGAGCTCCGTCGGCGATCGCGA
TGAACCCGACGACCGGACTCTCCTCCGCAACTTACTCTCTCAGATTGAATCACTGAAAGAAGAAACAGAATCTGAGGAGGTAGAATCTGCGGTAGATACTTGGAAAACAA
AAGCTAAAAATTCTGTTAGAGAGGAAATTGTTGATGATGAGTGTAGTAGTAGAGAAGAAATTGTTAGAGAGCTGAAGAAGGTGAAGAGGCAAAACCTTGTAACTCACTGT
CTTCTCTCAGTGATGATTGTGGTCACTGTTGTCTGGCAGCTTTCTGAGGTCTCCATTATCTTGAATATAAAAGATAAAATCAACCATCCCTTTAGATCCTTGGGCAGTTT
TCTCTCAGGAATTCTGAAACGCCCTAAAACCATTGTTGAGAGTACAGAGAAGAATTCATCAAAACAAGACCATGATGAAACTGCAGTGCTTCCTCATGTGGAATTGCCA
Protein sequenceShow/hide protein sequence
MEEEQRLELINLAIRRLIDEENNNKKSSDRSSVGDRDEPDDRTLLRNLLSQIESLKEETESEEVESAVDTWKTKAKNSVREEIVDDECSSREEIVRELKKVKRQNLVTHC
LLSVMIVVTVVWQLSEVSIILNIKDKINHPFRSLGSFLSGILKRPKTIVESTEKNSSKQDHDETAVLPHVELP