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MS002956 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002956
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMADS-box transcription factor 8-like
Genome locationscaffold595_1:390417..390539
RNA-Seq ExpressionMS002956
SyntenyMS002956
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025373.1 hypothetical protein SDJN02_11868, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-0670.73Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL
        +FS VEEPDFKKLNV +M+ LENQLEA+LDKIK QRV + +
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL

XP_022155415.1 MADS-box protein FLOWERING LOCUS C-like isoform X1 [Momordica charantia]4.3e-0894.59Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRV
        I SQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQR+
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRV

XP_022155416.1 MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia]4.3e-0894.59Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRV
        I SQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQR+
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRV

XP_022155417.1 MADS-box transcription factor 8-like isoform X3 [Momordica charantia]1.1e-0885.37Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL
        I SQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQR+ + +
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL

XP_038907043.1 uncharacterized protein LOC120092871 [Benincasa hispida]5.2e-0673.17Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL
        I SQVEEP+FKKL+V++MMQLENQLE TLDKIK QR+ + L
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL

TrEMBL top hitse value%identityAlignment
A0A0A0KFD8 Uncharacterized protein7.4e-0668.29Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL
        I SQVEEP+FKKL++T+M+QLENQLE+TLDKIK QR+ + +
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL

A0A1S3CCC5 MADS-box transcription factor 8-like9.6e-0668.29Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL
        I SQVEEP+FKKL++T+M+QLENQLE TLDKIK QR+ + +
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL

A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X12.1e-0894.59Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRV
        I SQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQR+
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRV

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X35.5e-0985.37Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL
        I SQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQR+ + +
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL

A0A6J1DRL9 MADS-box protein FLOWERING LOCUS C-like isoform X22.1e-0894.59Show/hide
Query:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRV
        I SQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQR+
Subjt:  IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTTCAGTCAGGTTGAAGAACCAGATTTCAAGAAGCTCAATGTAACTGAAATGATGCAACTGGAGAACCAACTTGAAGCCACACTCGACAAAATCAAAATTCAAAGAGT
GAGTTCATATCTT
mRNA sequenceShow/hide mRNA sequence
ATTTTCAGTCAGGTTGAAGAACCAGATTTCAAGAAGCTCAATGTAACTGAAATGATGCAACTGGAGAACCAACTTGAAGCCACACTCGACAAAATCAAAATTCAAAGAGT
GAGTTCATATCTT
Protein sequenceShow/hide protein sequence
IFSQVEEPDFKKLNVTEMMQLENQLEATLDKIKIQRVSSYL