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MS002959 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002959
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMADS-box transcription factor
Genome locationscaffold595_1:423541..423723
RNA-Seq ExpressionMS002959
SyntenyMS002959
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014654.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma]9.8e-2593.44Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVE+GL+IFTNRGRLYEFCSGN
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

XP_022155415.1 MADS-box protein FLOWERING LOCUS C-like isoform X1 [Momordica charantia]8.9e-2698.36Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC GN
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

XP_022155416.1 MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia]8.9e-2698.36Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC GN
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

XP_022155417.1 MADS-box transcription factor 8-like isoform X3 [Momordica charantia]8.9e-2698.36Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC GN
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

XP_023514717.1 MADS-box protein EJ2-like [Cucurbita pepo subsp. pepo]9.8e-2593.44Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIEVKRIED CNRHVTFCKRR+GLIKKARELSVLCDVE+GL+IFTNRGRLYEFCSGN
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

TrEMBL top hitse value%identityAlignment
A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X14.3e-2698.36Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC GN
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X34.3e-2698.36Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC GN
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

A0A6J1DRL9 MADS-box protein FLOWERING LOCUS C-like isoform X24.3e-2698.36Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFC GN
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like2.4e-2490.16Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIE+KRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFCSG+
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

A0A6J1KPU7 MADS-box protein 04g005320-like1.8e-2491.8Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGRKKIE+KRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL+IFTNRGRLYEFCSG+
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

SwissProt top hitse value%identityAlignment
O04067 Agamous-like MADS-box protein AGL9 homolog3.2e-1867.21Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGR ++E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS +
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

P29383 Agamous-like MADS-box protein AGL38.3e-1972.88Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS
        MGR K+E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ LLIF+NRG+LYEFCS
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS

Q03489 Agamous-like MADS-box protein AGL9 homolog3.2e-1867.21Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGR ++E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCS +
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

Q38836 Agamous-like MADS-box protein AGL118.3e-1968.85Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGR KIE+KRIE+S NR VTFCKRR+GL+KKA ELSVLCD E+ L++F+ RGRLYE+ + N
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

Q9SAR1 MADS-box transcription factor 88.3e-1970Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG
        MGR ++E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L+IF+NRG+LYEFCSG
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSG

Arabidopsis top hitse value%identityAlignment
AT2G03710.1 K-box region and MADS-box transcription factor family protein5.9e-2072.88Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS
        MGR K+E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ LLIF+NRG+LYEFCS
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS

AT2G03710.2 K-box region and MADS-box transcription factor family protein5.9e-2072.88Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS
        MGR K+E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ LLIF+NRG+LYEFCS
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS

AT2G03710.3 K-box region and MADS-box transcription factor family protein5.9e-2072.88Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS
        MGR K+E+KRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ LLIF+NRG+LYEFCS
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCS

AT4G09960.1 K-box region and MADS-box transcription factor family protein5.9e-2068.85Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGR KIE+KRIE+S NR VTFCKRR+GL+KKA ELSVLCD E+ L++F+ RGRLYE+ + N
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN

AT4G09960.2 K-box region and MADS-box transcription factor family protein5.9e-2068.85Show/hide
Query:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN
        MGR KIE+KRIE+S NR VTFCKRR+GL+KKA ELSVLCD E+ L++F+ RGRLYE+ + N
Subjt:  MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATAGCTGTAATCGCCATGTGACCTTCTGCAAGAGAAGATCTGGACTCATCAAGAAGGCTCGCGAGCTCTCTGT
TCTCTGCGACGTTGAGCTCGGACTCCTCATCTTCACCAACCGTGGCCGCCTCTACGAGTTTTGCAGCGGAAAT
mRNA sequenceShow/hide mRNA sequence
ATGGGACGGAAGAAGATCGAGGTGAAGCGAATCGAAGATAGCTGTAATCGCCATGTGACCTTCTGCAAGAGAAGATCTGGACTCATCAAGAAGGCTCGCGAGCTCTCTGT
TCTCTGCGACGTTGAGCTCGGACTCCTCATCTTCACCAACCGTGGCCGCCTCTACGAGTTTTGCAGCGGAAAT
Protein sequenceShow/hide protein sequence
MGRKKIEVKRIEDSCNRHVTFCKRRSGLIKKARELSVLCDVELGLLIFTNRGRLYEFCSGN