CuGenDBv2

Gene ID	MS002960
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	MADS-box transcription factor
Genome location	scaffold595_1:430714..430855
RNA-Seq Expression	MS002960
Synteny	MS002960
Gene Ontology terms	GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process) GO:0005634 - nucleus (cellular component) GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR002100 - Transcription factor, MADS-box IPR036879 - Transcription factor, MADS-box superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592961.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-09

77.08

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIED CNR+VTFCKRRSG+IKKA  +SVLCDVE+ LVVFTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

XP_022155415.1 MADS-box protein FLOWERING LOCUS C-like isoform X1 [Momordica charantia]

4.0e-10

77.08

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

XP_022155416.1 MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia]

4.0e-10

77.08

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

XP_022155417.1 MADS-box transcription factor 8-like isoform X3 [Momordica charantia]

4.0e-10

77.08

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

XP_023514206.1 MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo]

1.2e-09

77.08

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIED CNR+VTFCKRRSG+IKKA  +SVLCDVE+ LVVFTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X1

1.9e-10

77.08

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X3

1.9e-10

77.08

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

A0A6J1DRL9 MADS-box protein FLOWERING LOCUS C-like isoform X2

1.9e-10

77.08

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIEDSCNR+VTFCKRRSG+IKKA  +SVLCDVEL L++FTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like

5.7e-10

77.08

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIED CNR+VTFCKRRSG+IKKA  +SVLCDVE+ LVVFTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

A0A6J1KPU7 MADS-box protein 04g005320-like

7.4e-10

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIED CNR+VTFCKRRSG+IKKA  +SVLCDVE+ LV+FTNRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

SwissProt top hits

e value

%identity

Alignment

P17839 Floral homeotic protein AGAMOUS

1.3e-08

60.42

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE++ NR VTFCKRR+G++KKA  +SVLCD E+ L+VF++RG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

Q01540 Floral homeotic protein AGAMOUS

1.3e-08

60.42

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE++ NR VTFCKRR+G++KKA  +SVLCD E+ L+VF++RG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

Q2V0P1 MADS-box transcription factor 58

4.6e-09

64.58

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE++ NR VTFCKRRSG++KKA  +SVLCD E+ LVVF++RG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

Q38836 Agamous-like MADS-box protein AGL11

7.9e-09

62.5

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

Q40168 Floral homeotic protein AGAMOUS

2.7e-09

64.58

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE++ NR VTFCKRR+G++KKA  +SVLCD E+ LVVF+NRG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

Arabidopsis top hits

e value

%identity

Alignment

AT4G09960.1 K-box region and MADS-box transcription factor family protein

5.6e-10

62.5

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

AT4G09960.2 K-box region and MADS-box transcription factor family protein

5.6e-10

62.5

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

AT4G09960.3 K-box region and MADS-box transcription factor family protein

5.6e-10

62.5

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

AT4G09960.4 K-box region and MADS-box transcription factor family protein

5.6e-10

62.5

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE+S NR VTFCKRR+G++KKA  +SVLCD E+ L+VF+ RG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

AT4G18960.1 K-box region and MADS-box transcription factor family protein

9.5e-10

60.42

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Query:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL
        E  RIE++ NR VTFCKRR+G++KKA  +SVLCD E+ L+VF++RG L
Subjt:  ESNRIEDSCNRYVTFCKRRSGIIKKA-AISVLCDVELRLVVFTNRGVL

Sequences

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CDS sequence

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GAGTCGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACGTTCTGCAAGAGAAGATCTGGAATCATCAAGAAGGCTGCGATCTCTGTTCTCTGCGACGTTGAGCTCAG
ACTCGTCGTCTTCACCAACCGAGGAGTTTTG

mRNA sequence

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GAGTCGAATCGAATCGAAGATAGCTGTAATCGCTATGTGACGTTCTGCAAGAGAAGATCTGGAATCATCAAGAAGGCTGCGATCTCTGTTCTCTGCGACGTTGAGCTCAG
ACTCGTCGTCTTCACCAACCGAGGAGTTTTG

Protein sequence

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ESNRIEDSCNRYVTFCKRRSGIIKKAAISVLCDVELRLVVFTNRGVL

MS002960 (gene) of Bitter gourd (TR) v1 genome