CuGenDBv2

Gene ID	MS002963
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein S2, chloroplastic
Genome location	scaffold595_1:484751..484941
RNA-Seq Expression	MS002963
Synteny	MS002963
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001865 - Ribosomal protein S2 IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_004072451.1 ribosomal protein S2 [Corynocarpus laevigatus]

3.6e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

YP_009456050.1 ribosomal protein S2 [Momordica charantia]

3.6e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

YP_009674380.1 ribosomal protein S2 [Siraitia grosvenorii]

3.6e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

YP_009751474.1 ribosomal protein S2 [Thladiantha dubia]

3.6e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

YP_009752993.1 ribosomal protein S2 [Gerrardanthus macrorhizus]

2.8e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRLV---NDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  ++   ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRLV---NDTAIILIRLILNKLVFAICDHRSNSSQNP

TrEMBL top hits

e value

%identity

Alignment

A0A514YKR5 30S ribosomal protein S2, chloroplastic

1.7e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

A0A6C0UC22 30S ribosomal protein S2, chloroplastic

1.7e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

A0A6H0EW60 30S ribosomal protein S2, chloroplastic

1.3e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRLV---NDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  ++   ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRLV---NDTAIILIRLILNKLVFAICDHRSNSSQNP

A0A6H0EWZ7 30S ribosomal protein S2, chloroplastic

1.7e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

E5KU85 30S ribosomal protein S2, chloroplastic

1.7e-14

69.7

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EYRALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+S +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

SwissProt top hits

e value

%identity

Alignment

A4GYP7 30S ribosomal protein S2, chloroplastic

1.2e-15

66.67

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EY ALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+  +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

P08241 30S ribosomal protein S2, chloroplastic

6.8e-16

69.23

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQN
        QKEY ALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+S +N
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQN

Q09MI9 30S ribosomal protein S2, chloroplastic

3.4e-15

65.15

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EY AL+ECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+  +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

Q14FG8 30S ribosomal protein S2, chloroplastic

1.2e-15

66.67

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EY ALQECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+  +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

Q49L09 30S ribosomal protein S2, chloroplastic

3.4e-15

65.15

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP
        Q+EY AL+ECITLGI TICLIDTNCD  +  +    ND AI  IRLILNKLVFAIC+ RS+  +NP
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQNP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00160.1 ribosomal protein S2

1.1e-13

61.54

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Query:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQN
        Q+EY AL+ECITLGI TI LIDTNC+  +  +    ND AI  IR ILNKLVFAIC+ RS+  QN
Subjt:  QKEYRALQECITLGILTICLIDTNCDSQIFRL---VNDTAIILIRLILNKLVFAICDHRSNSSQN

Sequences

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CDS sequence

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CAAAAAGAATATCGAGCTCTTCAAGAATGTATCACATTGGGAATTCTAACTATTTGTTTAATTGATACAAATTGTGATTCGCAGATATTTAGACTCGTGAATGATACTGC
TATAATTTTAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTGTGATCATCGTTCTAACTCTTCACAGAATCCA

mRNA sequence

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CAAAAAGAATATCGAGCTCTTCAAGAATGTATCACATTGGGAATTCTAACTATTTGTTTAATTGATACAAATTGTGATTCGCAGATATTTAGACTCGTGAATGATACTGC
TATAATTTTAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTGTGATCATCGTTCTAACTCTTCACAGAATCCA

Protein sequence

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QKEYRALQECITLGILTICLIDTNCDSQIFRLVNDTAIILIRLILNKLVFAICDHRSNSSQNP

MS002963 (gene) of Bitter gourd (TR) v1 genome