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MS002978 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS002978
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF4408 domain-containing protein
Genome locationscaffold595_1:657212..657787
RNA-Seq ExpressionMS002978
SyntenyMS002978
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR025520 - Domain of unknown function DUF4408


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039829.1 DUF4408 domain-containing protein [Cucumis melo var. makuwa]5.4e-4559.49Show/hide
Query:  MDDITADKLFAMKYYYKKSQLFLYNFSLHS--LIIFFFSF-LLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSVN
        MD I A+KLFA+KY YKKSQLFLYN +L    +IIFFF++ L+S QSH FPPD  SSII+IV+TPPSFFSP CLFV+VN I+VYI+GE+KLT AK++S+N
Subjt:  MDDITADKLFAMKYYYKKSQLFLYNFSLHS--LIIFFFSF-LLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSVN

Query:  VMYEEYCAKRMEEIS--MSRDEDTRQLIEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALDYF
        +MY+EY  +R  E+   ++  E+ +QL+EK VE+KEEE +  ++D D+G +  +K    E E D +FANEELNKRAEAFIARVN QR++EA+D F
Subjt:  VMYEEYCAKRMEEIS--MSRDEDTRQLIEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALDYF

KAE8646757.1 hypothetical protein Csa_004884 [Cucumis sativus]3.3e-4258.33Show/hide
Query:  MDDITADKLFAMKYYYKKSQLFLYNFSL-HSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSVNVM
        MD I A+KLFA+KY YKKSQLFLYN ++ HSLI  FF++ LS QSH FPPD  SSII++V TPPSFFSP CLFV+VN I+VYI+GE+KLT AK++ +N M
Subjt:  MDDITADKLFAMKYYYKKSQLFLYNFSL-HSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSVNVM

Query:  YEEYCAKRMEEIS-MSRDEDTRQL-IEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALDY
        Y+EY  +R  E+  ++  E+ ++L +EK VE+KEEE +   ++ D+G   SEK    E E D + ANEELNKRAEAFIARVN QR++EA+D+
Subjt:  YEEYCAKRMEEIS-MSRDEDTRQL-IEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALDY

XP_007221609.1 zinc finger E-box-binding homeobox 1 [Prunus persica]3.8e-1438.5Show/hide
Query:  MDDITADKLFAMKYYYKK--SQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPS---FFSPRCLFVVVNVIIVYIIGERKLTDAKASS
        MD I  +KL AMK Y K+  SQ+F Y+  +H LI      L S+ SH FP    +  +  +  P S   FF+PRCLF+VVN I+V++IGE +L+  ++S 
Subjt:  MDDITADKLFAMKYYYKK--SQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPS---FFSPRCLFVVVNVIIVYIIGERKLTDAKASS

Query:  VNVMYEEYCAK-----------------RMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCD------DGTNDSEKEKQ------------REEEEDG
         N MY EY  +                 R E   +S+ ED  +++E+  E  E +E  H VD D      +GT++ EKE++            +EEEE  
Subjt:  VNVMYEEYCAK-----------------RMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCD------DGTNDSEKEKQ------------REEEEDG

Query:  EFANEELNKRAEAFIARVNMQRRVEA
            EELNKR EAFIARVN QR +EA
Subjt:  EFANEELNKRAEAFIARVNMQRRVEA

XP_034200059.1 cilia- and flagella-associated protein 251-like [Prunus dulcis]4.9e-1438.79Show/hide
Query:  MDDITADKLFAMKYYYKK--SQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPS---FFSPRCLFVVVNVIIVYIIGERKLTDAKASS
        MD I  +KL AMK Y K+  SQ+F Y+  +H LI      L S+ SH FP    +  +  +  P S   FF+PRCLF+VVN I+V++IGE +L+  ++S 
Subjt:  MDDITADKLFAMKYYYKK--SQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPS---FFSPRCLFVVVNVIIVYIIGERKLTDAKASS

Query:  VNVMYEEYCAK-----------------RMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCD------DGTNDSEKE--------------KQREEEE
         N MY EY  +                 R E   +S+ ED  +++E+  E  E +E  H VD D      +GT++ EKE              K+ EEEE
Subjt:  VNVMYEEYCAK-----------------RMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCD------DGTNDSEKE--------------KQREEEE

Query:  DGEFA----NEELNKRAEAFIARVNMQRRVEA
        + E A     EELNKR EAFIARVN QR +EA
Subjt:  DGEFA----NEELNKRAEAFIARVNMQRRVEA

XP_038875115.1 uncharacterized protein LOC120067646 [Benincasa hispida]9.2e-4561.05Show/hide
Query:  MDDITADKLFAMKYYYKKSQLFLYNFSL-HSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSV-NV
        MD I+A+KLFA+KY YKKSQLFLYN +L HSLIIFFF+F LS Q   FPPDA SS+I +VV PPSFFSP C FV+VN I++YI+GE+KL  A++SS+ N 
Subjt:  MDDITADKLFAMKYYYKKSQLFLYNFSL-HSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSV-NV

Query:  MYEEYCAKRMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALD
        MY+EY   +  E++M+  E+ +QL+EKVVE+KEEEE+      +DG + SEK    E E D E ANEELNKRAEAFIARVN QR++EA+D
Subjt:  MYEEYCAKRMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALD

TrEMBL top hitse value%identityAlignment
A0A0A0K9L0 DUF4408 domain-containing protein1.2e-4258.55Show/hide
Query:  MDDITADKLFAMKYYYKKSQLFLYNFSL-HSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSVNVM
        MD I A+KLFA+KY YKKSQLFLYN ++ HSLI  FF++ LS QSH FPPD  SSII++V TPPSFFSP CLFV+VN I+VYI+GE+KLT AK++ +N M
Subjt:  MDDITADKLFAMKYYYKKSQLFLYNFSL-HSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSVNVM

Query:  YEEYCAKRMEEIS-MSRDEDTRQL-IEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALDYF
        Y+EY  +R  E+  ++  E+ ++L +EK VE+KEEE +   ++ D+G   SEK    E E D + ANEELNKRAEAFIARVN QR++EA+D F
Subjt:  YEEYCAKRMEEIS-MSRDEDTRQL-IEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALDYF

A0A5D3DN17 DUF4408 domain-containing protein2.6e-4559.49Show/hide
Query:  MDDITADKLFAMKYYYKKSQLFLYNFSLHS--LIIFFFSF-LLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSVN
        MD I A+KLFA+KY YKKSQLFLYN +L    +IIFFF++ L+S QSH FPPD  SSII+IV+TPPSFFSP CLFV+VN I+VYI+GE+KLT AK++S+N
Subjt:  MDDITADKLFAMKYYYKKSQLFLYNFSLHS--LIIFFFSF-LLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSVN

Query:  VMYEEYCAKRMEEIS--MSRDEDTRQLIEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALDYF
        +MY+EY  +R  E+   ++  E+ +QL+EK VE+KEEE +  ++D D+G +  +K    E E D +FANEELNKRAEAFIARVN QR++EA+D F
Subjt:  VMYEEYCAKRMEEIS--MSRDEDTRQLIEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALDYF

A0A5E4EWE0 PREDICTED: L484_0101332.4e-1438.79Show/hide
Query:  MDDITADKLFAMKYYYKK--SQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPS---FFSPRCLFVVVNVIIVYIIGERKLTDAKASS
        MD I  +KL AMK Y K+  SQ+F Y+  +H LI      L S+ SH FP    +  +  +  P S   FF+PRCLF+VVN I+V++IGE +L+  ++S 
Subjt:  MDDITADKLFAMKYYYKK--SQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPS---FFSPRCLFVVVNVIIVYIIGERKLTDAKASS

Query:  VNVMYEEYCAK-----------------RMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCD------DGTNDSEKE--------------KQREEEE
         N MY EY  +                 R E   +S+ ED  +++E+  E  E +E  H VD D      +GT++ EKE              K+ EEEE
Subjt:  VNVMYEEYCAK-----------------RMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCD------DGTNDSEKE--------------KQREEEE

Query:  DGEFA----NEELNKRAEAFIARVNMQRRVEA
        + E A     EELNKR EAFIARVN QR +EA
Subjt:  DGEFA----NEELNKRAEAFIARVNMQRRVEA

A0A6P6GIJ2 glutamic acid-rich protein-like9.1e-1438.33Show/hide
Query:  MDDITADKLFAMKYYYKKSQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPP----SFFSPRCLFVVVNVIIVYIIGERKLTDAKASSV
        MD I A+KL AMK  Y+K Q F+YN   HSL     SFL  F        ++   + I ++ P    SFF+P CLFVVVN+IIV+++GE KL DA  SS 
Subjt:  MDDITADKLFAMKYYYKKSQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPP----SFFSPRCLFVVVNVIIVYIIGERKLTDAKASSV

Query:  NV--MYEEY-----CAKRMEEISMSRDEDTRQL--------------------IEKVVEKKEEEEVDHTVDCDDG-----TNDSEKEKQREEEEDGE--F
         V  +Y EY       KR +E  +   ++  +L                     ++ V+ K++E  D   DC D      TN +E++++  E+ED E   
Subjt:  NV--MYEEY-----CAKRMEEISMSRDEDTRQL--------------------IEKVVEKKEEEEVDHTVDCDDG-----TNDSEKEKQREEEEDGE--F

Query:  ANEELNKRAEAFIARVNMQRRVEALDY
          EELNKR E FIARVN QRR+E L Y
Subjt:  ANEELNKRAEAFIARVNMQRRVEALDY

M5XMS0 DUF4408 domain-containing protein1.8e-1438.5Show/hide
Query:  MDDITADKLFAMKYYYKK--SQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPS---FFSPRCLFVVVNVIIVYIIGERKLTDAKASS
        MD I  +KL AMK Y K+  SQ+F Y+  +H LI      L S+ SH FP    +  +  +  P S   FF+PRCLF+VVN I+V++IGE +L+  ++S 
Subjt:  MDDITADKLFAMKYYYKK--SQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPS---FFSPRCLFVVVNVIIVYIIGERKLTDAKASS

Query:  VNVMYEEYCAK-----------------RMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCD------DGTNDSEKEKQ------------REEEEDG
         N MY EY  +                 R E   +S+ ED  +++E+  E  E +E  H VD D      +GT++ EKE++            +EEEE  
Subjt:  VNVMYEEYCAK-----------------RMEEISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCD------DGTNDSEKEKQ------------REEEEDG

Query:  EFANEELNKRAEAFIARVNMQRRVEA
            EELNKR EAFIARVN QR +EA
Subjt:  EFANEELNKRAEAFIARVNMQRRVEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACATCACTGCAGACAAGCTTTTTGCCATGAAATATTATTACAAAAAAAGCCAACTCTTCCTCTACAATTTCAGTCTTCACTCTCTCATCATTTTCTTCTTTAG
TTTCTTGCTTTCTTTCCAATCTCATCGATTTCCTCCCGATGCATTTTCTTCGATTATCCAAATAGTGGTTACGCCGCCCTCGTTCTTCAGCCCGAGATGCCTGTTCGTAG
TCGTCAATGTCATCATCGTCTACATCATCGGAGAACGGAAGCTCACTGATGCAAAAGCGTCGTCGGTGAATGTAATGTATGAAGAGTATTGTGCTAAGAGGATGGAGGAG
ATAAGCATGAGTCGTGATGAAGATACGAGGCAATTGATTGAGAAAGTCGTGGAGAAAAAAGAAGAGGAAGAGGTTGATCACACCGTCGACTGCGACGACGGTACCAATGA
TAGTGAAAAGGAGAAGCAAAGGGAAGAAGAAGAGGATGGTGAGTTTGCCAATGAGGAGCTGAACAAAAGAGCAGAAGCTTTCATTGCAAGAGTTAACATGCAAAGGAGGG
TTGAAGCTCTGGATTATTTTCAATGG
mRNA sequenceShow/hide mRNA sequence
ATGGATGACATCACTGCAGACAAGCTTTTTGCCATGAAATATTATTACAAAAAAAGCCAACTCTTCCTCTACAATTTCAGTCTTCACTCTCTCATCATTTTCTTCTTTAG
TTTCTTGCTTTCTTTCCAATCTCATCGATTTCCTCCCGATGCATTTTCTTCGATTATCCAAATAGTGGTTACGCCGCCCTCGTTCTTCAGCCCGAGATGCCTGTTCGTAG
TCGTCAATGTCATCATCGTCTACATCATCGGAGAACGGAAGCTCACTGATGCAAAAGCGTCGTCGGTGAATGTAATGTATGAAGAGTATTGTGCTAAGAGGATGGAGGAG
ATAAGCATGAGTCGTGATGAAGATACGAGGCAATTGATTGAGAAAGTCGTGGAGAAAAAAGAAGAGGAAGAGGTTGATCACACCGTCGACTGCGACGACGGTACCAATGA
TAGTGAAAAGGAGAAGCAAAGGGAAGAAGAAGAGGATGGTGAGTTTGCCAATGAGGAGCTGAACAAAAGAGCAGAAGCTTTCATTGCAAGAGTTAACATGCAAAGGAGGG
TTGAAGCTCTGGATTATTTTCAATGG
Protein sequenceShow/hide protein sequence
MDDITADKLFAMKYYYKKSQLFLYNFSLHSLIIFFFSFLLSFQSHRFPPDAFSSIIQIVVTPPSFFSPRCLFVVVNVIIVYIIGERKLTDAKASSVNVMYEEYCAKRMEE
ISMSRDEDTRQLIEKVVEKKEEEEVDHTVDCDDGTNDSEKEKQREEEEDGEFANEELNKRAEAFIARVNMQRRVEALDYFQW