CuGenDBv2

Gene ID	MS002996
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LITAF domain-containing protein
Genome location	scaffold595_1:881017..882839
RNA-Seq Expression	MS002996
Synteny	MS002996
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006629 - LPS-induced tumour necrosis factor alpha factor IPR037519 - LITAF domain containing protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]

1.2e-67

87.22

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Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKN EPVVG+PLY G+N YQAGQIP NAI+GDPQGVPIQQTM+RDTPAPF C+YCGNSGLT++RSKIS AAVVGCM+PFMLGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CP+CKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]

9.2e-68

87.22

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Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKN EPVVG+PLY G+N YQAGQIP NAI+GDP GVPIQQTM+RDTPAPF C+YCGNSGLT++RSKISSAAVVGCM+PFMLGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CP+CKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

XP_008459901.1 PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]

4.6e-67

86.47

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Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKN EPVVG+PLY G+N YQAGQIP N I+GDPQGVPIQQTM+RDTPAPF C+YCGNSGLT++RSKIS AAVVGCM+PFMLGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CP+CKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

XP_022148974.1 GSH-induced LITAF domain protein [Momordica charantia]

3.2e-76

99.25

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Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSM+CLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_038906445.1 GSH-induced LITAF domain protein [Benincasa hispida]

6.8e-71

91.04

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Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKNDEPVVGIPLY G+N YQAGQIPSNAI+GDPQGVPIQQTM+RDTPAPFYC+YCGNSGLT VRSKISSAAVVGCM PF+LGVCFLFPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP+CKEKVGDFEK+DRCAVMDPP+WTQPSFALPA
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG7 LITAF domain-containing protein

4.5e-68

87.22

Show/hide

Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKN EPVVG+PLY G+N YQAGQIP NAI+GDP GVPIQQTM+RDTPAPF C+YCGNSGLT++RSKISSAAVVGCM+PFMLGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CP+CKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A1S3CCH3 uncharacterized protein LOC103498881

2.2e-67

86.47

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Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKN EPVVG+PLY G+N YQAGQIP N I+GDPQGVPIQQTM+RDTPAPF C+YCGNSGLT++RSKIS AAVVGCM+PFMLGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CP+CKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A5D3DMB0 Zf-LITAF-like domain-containing protein

5.8e-68

87.22

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Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKN EPVVG+PLY G+N YQAGQIP NAI+GDPQGVPIQQTM+RDTPAPF C+YCGNSGLT++RSKIS AAVVGCM+PFMLGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CP+CKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A6J1D5M9 GSH-induced LITAF domain protein

1.5e-76

99.25

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Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSM+CLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

A0A6J1GS01 GSH-induced LITAF domain protein

8.4e-67

86.57

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Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        MSKNDEPVVGIP Y G+NAYQAGQIP NAI+G PQGVPI QTM+RDTPAP+ C+YCGNSGLTS+RSKIS AAVVGCM+PFMLGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP+CKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

SwissProt top hits

e value

%identity

Alignment

Q94CD4 GSH-induced LITAF domain protein

5.5e-55

70.15

Show/hide

Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        M+K    V+G+P YAG N YQAG +P NAIYGDP G PIQQT++RDTPAPF CLYCGN+GLT++RSK   AAVV CM+PFMLG CFL PSMDCLW+K H+
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  KV DFEK D C VMDPP W QPSFALPA
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

Arabidopsis top hits

e value

%identity

Alignment

AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

3.9e-56

70.15

Show/hide

Query:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY
        M+K    V+G+P YAG N YQAG +P NAIYGDP G PIQQT++RDTPAPF CLYCGN+GLT++RSK   AAVV CM+PFMLG CFL PSMDCLW+K H+
Subjt:  MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHY

Query:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  KV DFEK D C VMDPP W QPSFALPA
Subjt:  CPNCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

Sequences

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CDS sequence

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ATGTCGAAGAACGACGAGCCGGTCGTCGGAATTCCATTATATGCCGGCGACAACGCGTATCAGGCCGGACAGATCCCTTCCAACGCCATTTATGGCGATCCTCAGGGGGT
TCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTCTTTATTGTGGAAATTCCGGACTCACCTCCGTCAGATCCAAGATAAGCTCTGCTGCTGTCG
TCGGTTGTATGGTACCATTTATGTTGGGAGTATGCTTTCTTTTTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAACTGCAAGGAAAAGGTTGGTGAT
TTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCGTTGCCTGCT

mRNA sequence

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Protein sequence

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MSKNDEPVVGIPLYAGDNAYQAGQIPSNAIYGDPQGVPIQQTMFRDTPAPFYCLYCGNSGLTSVRSKISSAAVVGCMVPFMLGVCFLFPSMDCLWHKYHYCPNCKEKVGD
FEKLDRCAVMDPPHWTQPSFALPA

MS002996 (gene) of Bitter gourd (TR) v1 genome