CuGenDBv2

Gene ID	MS003005
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	light-regulated protein-like
Genome location	scaffold595_1:953148..953727
RNA-Seq Expression	MS003005
Synteny	MS003005
Gene Ontology terms	GO:0009507 - chloroplast (cellular component) GO:0016020 - membrane (cellular component)
InterPro domains	IPR009856 - Light regulated Lir1

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039854.1 light-regulated protein-like [Cucumis melo var. makuwa]

8.6e-53

81.56

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Query:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS
        MQLQAALS+ PP  SCSL  LPPT K +AF I TRS+PR     LK+KASAVG++PSTVDY+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKGSS
Subjt:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS

Query:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        V+EPV+REYLQYDSPKTVFP EACDDLGGEFCDPEYQKGVY
Subjt:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

NP_001267523.1 light-regulated protein-like [Cucumis sativus]

1.5e-52

80.85

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Query:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS
        MQ QAALS+  P  SCSL  LPPT K +AF IPTRS+PR     LK+KASAVG+DPSTVDY+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKG+S
Subjt:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS

Query:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        V+EPV+REYLQYDSPKTVFP EACDDLGGEFCDPEYQKGVY
Subjt:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

XP_008459906.1 PREDICTED: light-regulated protein-like [Cucumis melo]

8.6e-53

81.56

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Query:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS
        MQLQAALS+ PP  SCSL  LPPT K +AF I TRS+PR     LK+KASAVG++PSTVDY+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKGSS
Subjt:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS

Query:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        V+EPV+REYLQYDSPKTVFP EACDDLGGEFCDPEYQKGVY
Subjt:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

XP_022148909.1 light-regulated protein-like [Momordica charantia]

1.4e-71

100

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Query:  MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSE
        MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSE
Subjt:  MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSE

Query:  PVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        PVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
Subjt:  PVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

XP_038906788.1 light-regulated protein, chloroplastic-like [Benincasa hispida]

7.3e-52

78.77

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Query:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHPA-------LKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPET
        MQLQAALS+   PSSCSL  LPPT K +AF + +RSI RHP        LK+KASAVG+DPSTVDY+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE 
Subjt:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHPA-------LKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPET

Query:  KKGSSVSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        KK  SV+EPVDREYLQYDSPKTVFP EACDDLGGEFCDPEYQKGVY
Subjt:  KKGSSVSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CBQ8 light-regulated protein-like

4.2e-53

81.56

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Query:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS
        MQLQAALS+ PP  SCSL  LPPT K +AF I TRS+PR     LK+KASAVG++PSTVDY+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKGSS
Subjt:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS

Query:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        V+EPV+REYLQYDSPKTVFP EACDDLGGEFCDPEYQKGVY
Subjt:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

A0A5D3DLY7 Light-regulated protein-like

4.2e-53

81.56

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Query:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS
        MQLQAALS+ PP  SCSL  LPPT K +AF I TRS+PR     LK+KASAVG++PSTVDY+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKGSS
Subjt:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS

Query:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        V+EPV+REYLQYDSPKTVFP EACDDLGGEFCDPEYQKGVY
Subjt:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

A0A6J1D5F7 light-regulated protein-like

6.9e-72

100

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Query:  MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSE
        MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSE
Subjt:  MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSE

Query:  PVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        PVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
Subjt:  PVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

A0A6J1JSC1 light-regulated protein, chloroplastic-like

1.0e-51

77.93

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Query:  MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPA-------LKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETK
        MQLQAA SL   PSSC LL  P TK +AF +P+RS+ RHP        LK+KASAVG+DPSTVDY+S SSVFPAEAC+TVGGEACDVEMYPEVKLKPE K
Subjt:  MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPA-------LKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETK

Query:  KGSSVSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        KG SVSE VDREYLQYDSPKTVFP EACDDLGGEFCDPEYQKGVY
Subjt:  KGSSVSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

Q39636 CR9 protein

7.1e-53

80.85

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Query:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS
        MQ QAALS+  P  SCSL  LPPT K +AF IPTRS+PR     LK+KASAVG+DPSTVDY+S SSVFPAEACDTVGGEACDVEMYPEVKLKPE KKG+S
Subjt:  MQLQAALSLTPPPSSCSLLVLPPT-KQLAFPIPTRSIPRHP--ALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS

Query:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY
        V+EPV+REYLQYDSPKTVFP EACDDLGGEFCDPEYQKGVY
Subjt:  VSEPVDREYLQYDSPKTVFPGEACDDLGGEFCDPEYQKGVY

SwissProt top hits

e value

%identity

Alignment

Q03200 Light-regulated protein, chloroplastic

4.3e-23

57.73

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Query:  PRHPAL--KSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS--VSEPVDREYLQYDSPKTVFPGEACDDLGGEFC
        PR  AL  ++ A+AV  + + VDY+S  SVFP EACD +GGEAC+V+MYPE KL        S   +E VDR+YL YD P TVFP EACDDLGGEFC
Subjt:  PRHPAL--KSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSS--VSEPVDREYLQYDSPKTVFPGEACDDLGGEFC

Q96500 Light-regulated protein 1, chloroplastic

1.0e-24

49.62

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Query:  LTPPPSSCSLLVLPPTKQLAFPIP-TRSIPRHPALK----SKASAVGKDPSTVDYTST-SSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPV
        L P PSS S      + +L F +P      R  +L+    S +S++  DP+TVDY S+  SVFPAEAC+ + G AC  ++YPEVKL  +       SEPV
Subjt:  LTPPPSSCSLLVLPPTKQLAFPIP-TRSIPRHPALK----SKASAVGKDPSTVDYTST-SSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPV

Query:  DREYLQYDSPKTVFPGEACDDLGGEFCDPEYQK
        DREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  DREYLQYDSPKTVFPGEACDDLGGEFCDPEYQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G26740.1 CCR-like

7.3e-26

49.62

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Query:  LTPPPSSCSLLVLPPTKQLAFPIP-TRSIPRHPALK----SKASAVGKDPSTVDYTST-SSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPV
        L P PSS S      + +L F +P      R  +L+    S +S++  DP+TVDY S+  SVFPAEAC+ + G AC  ++YPEVKL  +       SEPV
Subjt:  LTPPPSSCSLLVLPPTKQLAFPIP-TRSIPRHPALK----SKASAVGKDPSTVDYTST-SSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPV

Query:  DREYLQYDSPKTVFPGEACDDLGGEFCDPEYQK
        DREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  DREYLQYDSPKTVFPGEACDDLGGEFCDPEYQK

Sequences

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CDS sequence

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ATGCAGTTGCAGGCAGCTCTTTCCCTAACACCTCCTCCATCATCATGCTCCCTCCTAGTCCTCCCACCAACCAAGCAATTGGCTTTCCCAATACCAACCAGGTCCATCCC
AAGGCACCCCGCCCTAAAATCCAAGGCCAGTGCGGTTGGAAAAGACCCTTCAACTGTCGACTACACTTCCACCTCCTCTGTTTTTCCAGCAGAGGCTTGTGACACTGTTG
GAGGGGAGGCTTGTGATGTAGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGACCAAGAAGGGGAGTAGTGTTTCAGAGCCAGTTGATAGAGAGTATCTACAATATGAC
AGTCCCAAGACAGTCTTTCCAGGAGAGGCTTGCGATGATCTTGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTAC

mRNA sequence

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Protein sequence

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MQLQAALSLTPPPSSCSLLVLPPTKQLAFPIPTRSIPRHPALKSKASAVGKDPSTVDYTSTSSVFPAEACDTVGGEACDVEMYPEVKLKPETKKGSSVSEPVDREYLQYD
SPKTVFPGEACDDLGGEFCDPEYQKGVY

MS003005 (gene) of Bitter gourd (TR) v1 genome