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MS003013 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003013
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNADH-ubiquinone reductase complex 1 MLRQ subunit
Genome locationscaffold595_1:1032350..1032769
RNA-Seq ExpressionMS003013
SyntenyMS003013
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]1.6e-4786.21Show/hide
Query:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR
        GG   SEYMKGEYAPIYIVMGMV V V+I THTAKQQLLHSP+V  SKKKRESIPEV+DPDTVITSADKF+NKSFLRKVAHIQD  KTL DP HPDPFTR
Subjt:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR

Query:  PRNAETLKTAGVDPTR
        PRNAETLKTAGVDPTR
Subjt:  PRNAETLKTAGVDPTR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]1.3e-4684.48Show/hide
Query:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR
        GG   SEYMKGEYAPIYIVMGMV V V+I THTAKQQLLHSP+V  SKKKRESIPEV+DPDTVITSADKF+NKSFLRKVAHIQ   KTL DP HPDPFTR
Subjt:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR

Query:  PRNAETLKTAGVDPTR
        PRNAETLKTAG+DPTR
Subjt:  PRNAETLKTAGVDPTR

XP_022148953.1 uncharacterized protein LOC111017496 isoform X1 [Momordica charantia]1.0e-5498.23Show/hide
Query:  RSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA
        +SEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA
Subjt:  RSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA

Query:  ETLKTAGVDPTRS
        ETLKTAGVDPT S
Subjt:  ETLKTAGVDPTRS

XP_022148954.1 uncharacterized protein LOC111017496 isoform X2 [Momordica charantia]1.0e-5498.23Show/hide
Query:  RSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA
        +SEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA
Subjt:  RSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA

Query:  ETLKTAGVDPTRS
        ETLKTAGVDPT S
Subjt:  ETLKTAGVDPTRS

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]7.8e-4784.48Show/hide
Query:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR
        GG   SEYMKGEYAPIYIV+GMV VAV+IGTHTAKQQLLHSPVV  SKKKRESIPEVDDPDT+I SA+KF+NKSFLRKVAHIQ+  KTL DP HP+PFTR
Subjt:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR

Query:  PRNAETLKTAGVDPTR
        PRNAETLKTAGVDPTR
Subjt:  PRNAETLKTAGVDPTR

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein6.5e-4784.48Show/hide
Query:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR
        GG   SEYMKGEYAPIYIVMGMV V V+I THTAKQQLLHSP+V  SKKKRESIPEV+DPDTVITSADKF+NKSFLRKVAHIQ   KTL DP HPDPFTR
Subjt:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR

Query:  PRNAETLKTAGVDPTR
        PRNAETLKTAG+DPTR
Subjt:  PRNAETLKTAGVDPTR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like7.6e-4886.21Show/hide
Query:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR
        GG   SEYMKGEYAPIYIVMGMV V V+I THTAKQQLLHSP+V  SKKKRESIPEV+DPDTVITSADKF+NKSFLRKVAHIQD  KTL DP HPDPFTR
Subjt:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR

Query:  PRNAETLKTAGVDPTR
        PRNAETLKTAGVDPTR
Subjt:  PRNAETLKTAGVDPTR

A0A6J1D5I0 uncharacterized protein LOC111017496 isoform X14.9e-5598.23Show/hide
Query:  RSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA
        +SEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA
Subjt:  RSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA

Query:  ETLKTAGVDPTRS
        ETLKTAGVDPT S
Subjt:  ETLKTAGVDPTRS

A0A6J1D5L1 uncharacterized protein LOC111017496 isoform X24.9e-5598.23Show/hide
Query:  RSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA
        +SEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA
Subjt:  RSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNA

Query:  ETLKTAGVDPTRS
        ETLKTAGVDPT S
Subjt:  ETLKTAGVDPTRS

E5GB52 Uncharacterized protein1.9e-4685.34Show/hide
Query:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR
        GG   SEYMKGEYAPIYIVMGMV V V+I THTAKQQLLHSP+V  SKKKRESIPEV+DPDTVITSADKF+NKSFLRKVAHIQD  KTL DP H DPFTR
Subjt:  GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTR

Query:  PRNAETLKTAGVDPTR
        PRNAETLKTAGVDPTR
Subjt:  PRNAETLKTAGVDPTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein2.8e-2653.33Show/hide
Query:  GEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKT-LRDPQHPDPFTRPRNAETLKT
        GE+AP+ I+ G V +AV +  H+ KQQL+H+P +   K +R ++ EVDDP+  ++SADKF+NKS+LRKV  IQD +K  L DP  P+PFT PRNAETL +
Subjt:  GEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKT-LRDPQHPDPFTRPRNAETLKT

Query:  AGVDP
         GV P
Subjt:  AGVDP

AT5G07330.1 unknown protein1.6e-2142.99Show/hide
Query:  KGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNK--TLRDPQHPDPFTRPRNAETL
        KG++ P+Y+ +G++ ++VT G +TA   L  +P V ++KK RE++PE++DPD V+  AD+F N+S+ RK+AH+Q+ +K   + DP   D F     A TL
Subjt:  KGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNK--TLRDPQHPDPFTRPRNAETL

Query:  KTAGVDP
        K  GVDP
Subjt:  KTAGVDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTGGGTGGCACAGGAGCGAGTACATGAAGGGGGAGTACGCCCCAATCTACATTGTTATGGGGATGGTGGTGGTTGCCGTGACGATCGGAACCCACACCGCGAAGCAGCA
GCTGTTGCATTCGCCAGTGGTGATGCTGAGCAAGAAGAAGAGGGAGAGCATTCCGGAGGTGGATGACCCCGACACCGTCATCACATCCGCCGACAAGTTTGTCAACAAAT
CATTTCTTAGGAAGGTGGCTCACATTCAGGACCACAACAAAACGCTGCGCGATCCCCAACACCCCGATCCTTTTACACGGCCTCGAAATGCTGAAACTCTCAAAACGGCT
GGAGTGGATCCTACCCGCTCC
mRNA sequenceShow/hide mRNA sequence
GGTGGGTGGCACAGGAGCGAGTACATGAAGGGGGAGTACGCCCCAATCTACATTGTTATGGGGATGGTGGTGGTTGCCGTGACGATCGGAACCCACACCGCGAAGCAGCA
GCTGTTGCATTCGCCAGTGGTGATGCTGAGCAAGAAGAAGAGGGAGAGCATTCCGGAGGTGGATGACCCCGACACCGTCATCACATCCGCCGACAAGTTTGTCAACAAAT
CATTTCTTAGGAAGGTGGCTCACATTCAGGACCACAACAAAACGCTGCGCGATCCCCAACACCCCGATCCTTTTACACGGCCTCGAAATGCTGAAACTCTCAAAACGGCT
GGAGTGGATCCTACCCGCTCC
Protein sequenceShow/hide protein sequence
GGWHRSEYMKGEYAPIYIVMGMVVVAVTIGTHTAKQQLLHSPVVMLSKKKRESIPEVDDPDTVITSADKFVNKSFLRKVAHIQDHNKTLRDPQHPDPFTRPRNAETLKTA
GVDPTRS