; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003054 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003054
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCASP-like protein
Genome locationscaffold234:186006..186731
RNA-Seq ExpressionMS003054
SyntenyMS003054
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR006702 - Casparian strip membrane protein domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458887.1 PREDICTED: CASP-like protein 4D1 [Cucumis melo]3.5e-4773.33Show/hide
Query:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ--GN--IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL
        M +KIAS VLRV+TFVFL +SIIVL TNS+  GN  +HFHNVNSYR+AMATII+GGAFNLLQIAL+LY +++K+DG++LF FYGDKVLSY LLAGAAA L
Subjt:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ--GN--IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL

Query:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN
        G  +DL AN++ + SFF +GNAAAALLL+AFLCSA IS+LSSLALSNKPN
Subjt:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN

XP_022134262.1 CASP-like protein 4D1 [Momordica charantia]5.5e-6998.03Show/hide
Query:  MEATITMGSKIASLVLRVVTFVFLFISIIVLATNSQGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAA
        MEATITMGSKIASLVLRVVTFVFLFISIIVLATNSQGNIHFHNVNSYRFAMATII+GGAFNLLQIALSLYYIISKS GNLLFYFYGDKVLSYVLL+GAAA
Subjt:  MEATITMGSKIASLVLRVVTFVFLFISIIVLATNSQGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAA

Query:  GLGGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN
        GLGGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN
Subjt:  GLGGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN

XP_023551429.1 CASP-like protein 4D1 [Cucurbita pepo subsp. pepo]2.1e-4471.81Show/hide
Query:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ----GNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL
        MG+KIAS VLRV+TFVFL ISIIVL T S+      + FHNVNSYRFAMATII+GGAFNLLQIAL+LY +I+K+DG +LF F+GDKVLSY LLAGAAA L
Subjt:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ----GNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL

Query:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP
        G  IDL ANI+ + SFF +GNAAAALLL+AFLCSA +S+LSS ALS+KP
Subjt:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP

XP_031741109.1 CASP-like protein 4D1 isoform X1 [Cucumis sativus]2.7e-4776.67Show/hide
Query:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ--GN--IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL
        MG+KIAS VLRV+ F FL ISIIVL TNS+  GN   HFHNVNSYRFAMATIIVGGAFNLLQIALSLY +I+K+DG++LF FYGDK+LSYVLLAGAAA L
Subjt:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ--GN--IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL

Query:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN
        G  IDL AN+    SFF +GNAAAALLL+AFLCSA IS+LSSLALSNKPN
Subjt:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN

XP_038877615.1 CASP-like protein 4D1 [Benincasa hispida]1.9e-4875.33Show/hide
Query:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ----GNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL
        MGSKIASLVLRVVTFVFL ISIIVLATNS+       HFHNVNSYR+A+ TII+GGAFNLLQIAL+LY +++K+DGNLLF FYGDKVLSYVLL+GAAA L
Subjt:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ----GNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL

Query:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN
        G GIDL AN+E + SFF  GNA AALLL+AF CSA +S+LSSLALSNK N
Subjt:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN

TrEMBL top hitse value%identityAlignment
A0A1S3C911 CASP-like protein1.7e-4773.33Show/hide
Query:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ--GN--IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL
        M +KIAS VLRV+TFVFL +SIIVL TNS+  GN  +HFHNVNSYR+AMATII+GGAFNLLQIAL+LY +++K+DG++LF FYGDKVLSY LLAGAAA L
Subjt:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ--GN--IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL

Query:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN
        G  +DL AN++ + SFF +GNAAAALLL+AFLCSA IS+LSSLALSNKPN
Subjt:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN

A0A6J1BZ60 CASP-like protein2.7e-6998.03Show/hide
Query:  MEATITMGSKIASLVLRVVTFVFLFISIIVLATNSQGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAA
        MEATITMGSKIASLVLRVVTFVFLFISIIVLATNSQGNIHFHNVNSYRFAMATII+GGAFNLLQIALSLYYIISKS GNLLFYFYGDKVLSYVLL+GAAA
Subjt:  MEATITMGSKIASLVLRVVTFVFLFISIIVLATNSQGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAA

Query:  GLGGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN
        GLGGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN
Subjt:  GLGGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN

A0A6J1C1A4 CASP-like protein7.6e-3251.27Show/hide
Query:  GSKIASLVLRVVTFVFLFISIIVLATNS---------QGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGA
        GS+IASL+LR++TFV +FIS++++ATNS         +  + F +V SYR+  A  ++G A +LLQIAL+LY++++KSDG   F  + DK+L+Y+LL+GA
Subjt:  GSKIASLVLRVVTFVFLFISIIVLATNS---------QGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGA

Query:  AAGLGGGIDLNANIEGM-----GSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP
        +AGLG GIDL +N + +      SFF KG+A+AA+LL+AF+CSA +SILSSLAL  KP
Subjt:  AAGLGGGIDLNANIEGM-----GSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP

A0A6J1FMS6 CASP-like protein1.0e-4472.48Show/hide
Query:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ----GNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL
        MG+KIAS VLRV+TFVFL ISIIVL T S+      + FHNVNSYRFAMATII+GGAFNLLQIAL+LY +I+KSDG +LF F+GDKVLSY LLAGAAA L
Subjt:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ----GNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL

Query:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP
        G  IDL ANI+ + SFF +GNAAAALLL+AFLCSA +S+LSS ALS+KP
Subjt:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP

A0A6J1JYE7 CASP-like protein1.8e-4471.81Show/hide
Query:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ----GNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL
        MG+KIAS VLRV+TFVFL ISIIVL T S+      + FHNVNSYRFAMATII+GGAFNLLQIAL+LY +I+K+DG +LF F+GDKVLSY LLAGAAA L
Subjt:  MGSKIASLVLRVVTFVFLFISIIVLATNSQ----GNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGL

Query:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP
        G  IDL ANI+ + SFF +GNAAAALLL+AFLCSA +S+LSS ALS+KP
Subjt:  GGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP

SwissProt top hitse value%identityAlignment
A1XGB4 CASP-like protein PIMP11.3e-1541.83Show/hide
Query:  SLVLRVVTFVFLFISIIVLATNSQG--------NIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKS----DGNLLFYFYGDKVLSYVLLAGAAA
        SL++R++T + L IS IV+ATN+Q          I F +  +YR+ +AT+I+G A+ LLQIA S+  + + +    +G LLF FYGDK +SY L+ GAAA
Subjt:  SLVLRVVTFVFLFISIIVLATNSQG--------NIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKS----DGNLLFYFYGDKVLSYVLLAGAAA

Query:  GLGGGIDLNANIEG---MGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNK
          G   DL   +EG      F    NAAA+L LI F  + A SI SS  L  +
Subjt:  GLGGGIDLNANIEG---MGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNK

B9NBE5 CASP-like protein 4D14.0e-2240.99Show/hide
Query:  TMGSKIASLVLRVVTFVFLFISIIVLATNS--------QGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKS------DGNLLFYFYGDKVLS
        +M S++ +L LRV+TF FL +S++++ TN+        +  +   +  SYR+ +A I  G  + +LQIAL+L +I  ++      DGNL+F FYGDKV+S
Subjt:  TMGSKIASLVLRVVTFVFLFISIIVLATNS--------QGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKS------DGNLLFYFYGDKVLS

Query:  YVLLAGAAAGLGGGIDLNANIEGMG--SFFGKGNAAAALLLIAFLCSAAISILSSLALSNK
        Y+L  GAAA  G   +L   + G+G   FF KG A+A+LLL+ F+C+A +S+ SS AL  K
Subjt:  YVLLAGAAAGLGGGIDLNANIEGMG--SFFGKGNAAAALLLIAFLCSAAISILSSLALSNK

B9SXY8 CASP-like protein 4D14.6e-2643.04Show/hide
Query:  TMGSKIASLVLRVVTFVFLFISIIVLATNS--------QGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYI-----ISKSDGNLLFYFYGDKVLSY
        ++ S++A+L+LR++TF+FL  S+++L TN+        +  +HF +V +YR+ +ATI++G A+ +LQIA +LYY+     +   DGNL F F+GDKV+SY
Subjt:  TMGSKIASLVLRVVTFVFLFISIIVLATNS--------QGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYI-----ISKSDGNLLFYFYGDKVLSY

Query:  VLLAGAAAGLGGGIDLNANIEGMG---SFFGKGNAAAALLLIAFLCSAAISILSSLAL
        +L+ GAAAG     D+     G G   +F  KG A+A+LLLI F+C+A +S+ SS AL
Subjt:  VLLAGAAAGLGGGIDLNANIEGMG---SFFGKGNAAAALLLIAFLCSAAISILSSLAL

C6T1Z6 CASP-like protein 4D16.2e-2344.16Show/hide
Query:  GSKIASLVLRVVTFVFLFISIIVLATNSQGN------IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIIS-----KSDGNLLFYFYGDKVLSYVLLA
        GS+   L+LRV+TFVFL I++I++A   Q +      I F+++ +YR+ ++TII+G A+NLLQ+ALS++ ++S       DG  LF F+GDK++SY+L++
Subjt:  GSKIASLVLRVVTFVFLFISIIVLATNSQGN------IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIIS-----KSDGNLLFYFYGDKVLSYVLLA

Query:  GAAAGLGGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNK
        G+AAG G  ++L   +    SF  K NA+A+LLLIAFL +A  S  +S AL  K
Subjt:  GAAAGLGGGIDLNANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNK

D7LD59 CASP-like protein 4D24.8e-1536.59Show/hide
Query:  KIASLVLRVVTFVFLFISIIVLATN-----SQGN---IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIIS------KSDGNLLFYFYGDKVLSYVLL
        K++ L+LRV+T VFL I++I+L+TN     SQG+    HF +V +YR+ ++  ++G    LL   + L++ IS      K+  N    FYGDK++SY++ 
Subjt:  KIASLVLRVVTFVFLFISIIVLATN-----SQGN---IHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIIS------KSDGNLLFYFYGDKVLSYVLL

Query:  AGAAAGLGGGIDLN---------ANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNK
         G+AAG G   DL           + + +  FF +G A+A+LLL +F+C A +S+ SSLA++ +
Subjt:  AGAAAGLGGGIDLN---------ANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNK

Arabidopsis top hitse value%identityAlignment
AT2G39518.1 Uncharacterised protein family (UPF0497)9.9e-1636.25Show/hide
Query:  KIASLVLRVVTFVFLFISIIVLATN-----SQGN---IHFHNVNSYRFAMATIIVGGAFNLLQI--ALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAA
        K+  L+LRV+T VFL I++I+L+TN     SQG+    HF +V +YR+ ++  ++G  + ++Q+   +S +    K+  N    FYGDK++SY++  G+A
Subjt:  KIASLVLRVVTFVFLFISIIVLATN-----SQGN---IHFHNVNSYRFAMATIIVGGAFNLLQI--ALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAA

Query:  AGLGGGIDLN---------ANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNK
        AG G   DL           + + +  FF KG A+A+LLL AF+C A +S+ SS A++ +
Subjt:  AGLGGGIDLN---------ANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNK

AT2G39530.1 Uncharacterised protein family (UPF0497)1.4e-1435.03Show/hide
Query:  LVLRVVTFVFLFISIIVLATN--------SQGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLL--FYFYGDKVLSYVLLAGAAAGLG
        L+LRV+T  FL I++++++TN        +   + F++V +YR+ ++  ++G  + ++Q+ L++    +     L   F FYGDKV+SY+L  G+AAG G
Subjt:  LVLRVVTFVFLFISIIVLATN--------SQGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLL--FYFYGDKVLSYVLLAGAAAGLG

Query:  GGIDLN---------ANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP
           DL           + + +  FF KG A+A+LLL AF+  A +S+ SSLALS +P
Subjt:  GGIDLN---------ANIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCACAATCACAATGGGTTCAAAGATTGCTTCTCTTGTGCTCAGAGTTGTCACTTTCGTTTTCCTCTTCATTTCCATCATAGTGTTGGCCACCAATTCCCAAGG
CAATATTCATTTCCATAATGTCAATTCCTATAGGTTTGCGATGGCAACCATCATTGTTGGAGGTGCATTCAATCTCTTGCAAATTGCCTTGTCCCTTTATTATATCATAT
CCAAAAGCGACGGCAATCTTTTATTCTATTTCTACGGTGACAAGGTTTTGTCGTACGTTCTGCTGGCGGGAGCTGCGGCGGGACTGGGTGGTGGCATAGATTTGAATGCG
AATATTGAAGGGATGGGGTCGTTCTTCGGGAAGGGCAACGCGGCGGCGGCTCTTCTGCTGATTGCGTTTCTTTGCAGTGCTGCCATCTCAATTCTTTCCTCTCTGGCCCT
CTCCAACAAACCTAAT
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCCACAATCACAATGGGTTCAAAGATTGCTTCTCTTGTGCTCAGAGTTGTCACTTTCGTTTTCCTCTTCATTTCCATCATAGTGTTGGCCACCAATTCCCAAGG
CAATATTCATTTCCATAATGTCAATTCCTATAGGTTTGCGATGGCAACCATCATTGTTGGAGGTGCATTCAATCTCTTGCAAATTGCCTTGTCCCTTTATTATATCATAT
CCAAAAGCGACGGCAATCTTTTATTCTATTTCTACGGTGACAAGGTTTTGTCGTACGTTCTGCTGGCGGGAGCTGCGGCGGGACTGGGTGGTGGCATAGATTTGAATGCG
AATATTGAAGGGATGGGGTCGTTCTTCGGGAAGGGCAACGCGGCGGCGGCTCTTCTGCTGATTGCGTTTCTTTGCAGTGCTGCCATCTCAATTCTTTCCTCTCTGGCCCT
CTCCAACAAACCTAAT
Protein sequenceShow/hide protein sequence
MEATITMGSKIASLVLRVVTFVFLFISIIVLATNSQGNIHFHNVNSYRFAMATIIVGGAFNLLQIALSLYYIISKSDGNLLFYFYGDKVLSYVLLAGAAAGLGGGIDLNA
NIEGMGSFFGKGNAAAALLLIAFLCSAAISILSSLALSNKPN