; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003055 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003055
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCASP-like protein
Genome locationscaffold234:187917..189635
RNA-Seq ExpressionMS003055
SyntenyMS003055
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR006702 - Casparian strip membrane protein domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022134193.1 CASP-like protein 4D1 [Momordica charantia]1.6e-7499.39Show/hide
Query:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL
        MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDK LTYL
Subjt:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL

Query:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
Subjt:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

XP_022954145.1 CASP-like protein 4D1 [Cucurbita moschata]1.1e-5477.3Show/hide
Query:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL
        M  SKGSRIASLILRILTF+LIFISL+I ATNSKT  KG E E   +FKDVYSYRYL +  VIGA LSLLQIAL +Y+VVTKS  T  FDMFSDK L+YL
Subjt:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL

Query:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        LLSGASAGLGAGIDLR   K+LVGN+ NSFFDKG+ASAA+LLLAFIC+AVVSILSSLAL+RKP
Subjt:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

XP_022990642.1 CASP-like protein 4D1 [Cucurbita maxima]4.9e-5577.3Show/hide
Query:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL
        M  SKGSRIASLILRILTF+LIFISLLI ATNSKT+ KG E E K +FKDVYSYRYL +  +IGA LSLLQIAL +Y+VVTKS  T  FDMFSDK L+YL
Subjt:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL

Query:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        LLSGASAGLGAGIDLR   K+LVGN+ NSF DKG+ASAA+LLLAFIC+AVVSILSSLAL+RKP
Subjt:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

XP_023525049.1 CASP-like protein 4D1 [Cucurbita pepo subsp. pepo]8.3e-5576.69Show/hide
Query:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL
        M  SKGSRIASLILRILTF+LIFISL+I ATNSKT  KG + E K +FKDVYSYRYL +  +IGA LSLLQIAL +Y+VVTKS  T  FDMFSDK L+YL
Subjt:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL

Query:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        LLSGASAGLGAGIDLR   K+LVGN+ NSFFDKG+ASAA+LLLAFIC+AVVSILSSLAL+RKP
Subjt:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

XP_038877614.1 CASP-like protein 4D1 [Benincasa hispida]1.2e-6181.99Show/hide
Query:  ASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYLLL
        ASKGSRIASLILRILTF+LIF++LLIIATNSKTVL+GT  E K+EFKDV SYRYL A AVIG ALSLLQIA T+YH+VTK DGTP FD+FSDK L+YLLL
Subjt:  ASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYLLL

Query:  SGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        SGASAGLGAGID+R N+K+LVGN FNSFFDKGSA+AAILLLAFIC+A+VSILSSLAL+RKP
Subjt:  SGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

TrEMBL top hitse value%identityAlignment
A0A6J1C1A4 CASP-like protein7.8e-7599.39Show/hide
Query:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL
        MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDK LTYL
Subjt:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL

Query:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
Subjt:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

A0A6J1GRM4 CASP-like protein5.3e-5577.3Show/hide
Query:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL
        M  SKGSRIASLILRILTF+LIFISL+I ATNSKT  KG E E   +FKDVYSYRYL +  VIGA LSLLQIAL +Y+VVTKS  T  FDMFSDK L+YL
Subjt:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL

Query:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        LLSGASAGLGAGIDLR   K+LVGN+ NSFFDKG+ASAA+LLLAFIC+AVVSILSSLAL+RKP
Subjt:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

A0A6J1HET3 CASP-like protein9.0e-5573.01Show/hide
Query:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL
        MAASKGSRIASLILRILTF+LIFISL+I ATNSKT+ KGTE EAK+EFK+VYSYRYL AAAVIG  LSL+QI L++YH+VTKS+GTP F +FSD  L+YL
Subjt:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL

Query:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        LLS +SA LGAGID+R+N K+L G +F+SFFD+GS +AA+L +AF+C+AVVSILS+LAL+RKP
Subjt:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

A0A6J1JJD2 CASP-like protein2.4e-5577.3Show/hide
Query:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL
        M  SKGSRIASLILRILTF+LIFISLLI ATNSKT+ KG E E K +FKDVYSYRYL +  +IGA LSLLQIAL +Y+VVTKS  T  FDMFSDK L+YL
Subjt:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL

Query:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        LLSGASAGLGAGIDLR   K+LVGN+ NSF DKG+ASAA+LLLAFIC+AVVSILSSLAL+RKP
Subjt:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

A0A6J1JSF8 CASP-like protein1.7e-5372.39Show/hide
Query:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL
        MAASKGSRIA+LILRILT +LIFISL+I A+NSKT+ KGTE EAK+EFK+VYSYRYL AAAVIG  LSL+QI L++YH+VTKS+GTP F +FSD  L+YL
Subjt:  MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYL

Query:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        LLS +SA LGAGID R+N K+L G +F+SFFD+GS +AA+LL+AFIC+AVVSILS+LAL+RKP
Subjt:  LLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

SwissProt top hitse value%identityAlignment
B9NBE5 CASP-like protein 4D12.2e-2644.31Show/hide
Query:  AASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHV------VTKSDGTPFFDMFSDK
        A S  SR+ +L LR+LTF  + +SL+I+ TN+ T+  G + E KV  KD YSYRY+ AA   G   ++LQIALTL H+       T  DG   FD + DK
Subjt:  AASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHV------VTKSDGTPFFDMFSDK

Query:  FLTYLLLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK
         ++Y+L +GA+A  GA  +L++    L G   + FF+KG ASA++LLL F+C+A++S+ SS AL +K
Subjt:  FLTYLLLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK

B9SXY8 CASP-like protein 4D14.1e-2846.34Show/hide
Query:  SKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVT-----KSDGTPFFDMFSDKFLT
        S  SR+A+LILRILTF+ +  SL+I+ TN+ T L+    E KV FKDVY+YRY+ A  VIG A ++LQIA TLY+V T       DG   FD F DK ++
Subjt:  SKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVT-----KSDGTPFFDMFSDKFLT

Query:  YLLLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK
        Y+L++GA+AG  +  D++  +       F++F +KG ASA++LL+ F+C+AV+S+ SS AL ++
Subjt:  YLLLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK

C6T1Z6 CASP-like protein 4D11.3e-2342.86Show/hide
Query:  AASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVE--FKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVT-----KSDGTPFFDMFSD
        ++S GSR   L+LR+LTFV + I+L++IA     ++K T+ E  VE  F D+Y+YRY+ +  +IG A +LLQ+AL+++ VV+       DG   FD F D
Subjt:  AASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVE--FKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVT-----KSDGTPFFDMFSD

Query:  KFLTYLLLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK
        K ++YLL+SG++AG G  ++L        G   NSF DK +ASA++LL+AF+ +AV S  +S AL +K
Subjt:  KFLTYLLLSGASAGLGAGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK

Q56X75 CASP-like protein 4D26.3e-2139.75Show/hide
Query:  RIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVT--KSDGTPFFDMFSDKFLTYLLLSGA
        ++  L+LR+LT V + I+L+I++TNS T++    A  K  FKDVY+YRY+ +AAVIG   +++Q+  T+    T  K+      D + DK ++YL+ +G+
Subjt:  RIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVT--KSDGTPFFDMFSDKFLTYLLLSGA

Query:  SAGLGAGIDLRSNYKDLVG----NIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK
        +AG G   DL+  +  LV     +  + FF KG ASA++LL AFIC AV+S+ SS A+ ++
Subjt:  SAGLGAGIDLRSNYKDLVG----NIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK

Q8GWD5 CASP-like protein 4D11.1e-2040.12Show/hide
Query:  RIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDG--TPFFDMFSDKFLTYLLLSGA
        R   L+LR+LT   + I++++I+TN+ T L+ +    K+ F DVY+YRY+ +AAVIG   +++Q+ LT+    T      T  FD + DK ++YLL +G+
Subjt:  RIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDG--TPFFDMFSDKFLTYLLLSGA

Query:  SAGLGAGIDLRSNYKDLV----GNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        +AG G   DL+  Y  L+     +  + FF KG ASA++LL AF+  AV+S+ SSLAL ++P
Subjt:  SAGLGAGIDLRSNYKDLV----GNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP

Arabidopsis top hitse value%identityAlignment
AT2G39518.1 Uncharacterised protein family (UPF0497)4.5e-2239.75Show/hide
Query:  RIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVT--KSDGTPFFDMFSDKFLTYLLLSGA
        ++  L+LR+LT V + I+L+I++TNS T++    A  K  FKDVY+YRY+ +AAVIG   +++Q+  T+    T  K+      D + DK ++YL+ +G+
Subjt:  RIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVT--KSDGTPFFDMFSDKFLTYLLLSGA

Query:  SAGLGAGIDLRSNYKDLVG----NIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK
        +AG G   DL+  +  LV     +  + FF KG ASA++LL AFIC AV+S+ SS A+ ++
Subjt:  SAGLGAGIDLRSNYKDLVG----NIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRK

AT2G39530.1 Uncharacterised protein family (UPF0497)7.6e-2240.12Show/hide
Query:  RIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDG--TPFFDMFSDKFLTYLLLSGA
        R   L+LR+LT   + I++++I+TN+ T L+ +    K+ F DVY+YRY+ +AAVIG   +++Q+ LT+    T      T  FD + DK ++YLL +G+
Subjt:  RIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDG--TPFFDMFSDKFLTYLLLSGA

Query:  SAGLGAGIDLRSNYKDLV----GNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP
        +AG G   DL+  Y  L+     +  + FF KG ASA++LL AF+  AV+S+ SSLAL ++P
Subjt:  SAGLGAGIDLRSNYKDLV----GNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCCTCGAAAGGTTCAAGAATTGCTTCACTTATATTAAGAATTCTGACTTTTGTTTTGATCTTCATTTCTCTGTTAATCATCGCCACCAATTCTAAAACCGTGCT
CAAAGGAACTGAAGCCGAAGCAAAAGTTGAGTTTAAAGATGTTTATTCCTATCGGTACTTGACGGCAGCTGCTGTTATAGGAGCTGCTTTGAGTTTGTTGCAAATTGCTC
TCACCCTTTACCATGTCGTTACCAAAAGTGATGGAACTCCCTTCTTCGATATGTTCAGTGATAAGTTCTTGACGTACCTTTTATTATCGGGCGCCTCGGCGGGACTGGGC
GCTGGAATCGATCTGAGATCGAACTATAAAGATCTAGTTGGCAACATTTTCAACTCATTTTTCGACAAGGGCAGTGCCTCAGCTGCTATTCTTCTCCTTGCCTTTATTTG
CAGTGCCGTCGTCTCTATTCTCTCTTCCTTGGCCCTCGTCAGAAAACCC
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCCTCGAAAGGTTCAAGAATTGCTTCACTTATATTAAGAATTCTGACTTTTGTTTTGATCTTCATTTCTCTGTTAATCATCGCCACCAATTCTAAAACCGTGCT
CAAAGGAACTGAAGCCGAAGCAAAAGTTGAGTTTAAAGATGTTTATTCCTATCGGTACTTGACGGCAGCTGCTGTTATAGGAGCTGCTTTGAGTTTGTTGCAAATTGCTC
TCACCCTTTACCATGTCGTTACCAAAAGTGATGGAACTCCCTTCTTCGATATGTTCAGTGATAAGTTCTTGACGTACCTTTTATTATCGGGCGCCTCGGCGGGACTGGGC
GCTGGAATCGATCTGAGATCGAACTATAAAGATCTAGTTGGCAACATTTTCAACTCATTTTTCGACAAGGGCAGTGCCTCAGCTGCTATTCTTCTCCTTGCCTTTATTTG
CAGTGCCGTCGTCTCTATTCTCTCTTCCTTGGCCCTCGTCAGAAAACCC
Protein sequenceShow/hide protein sequence
MAASKGSRIASLILRILTFVLIFISLLIIATNSKTVLKGTEAEAKVEFKDVYSYRYLTAAAVIGAALSLLQIALTLYHVVTKSDGTPFFDMFSDKFLTYLLLSGASAGLG
AGIDLRSNYKDLVGNIFNSFFDKGSASAAILLLAFICSAVVSILSSLALVRKP