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MS003088 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003088
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II protein D1
Genome locationscaffold234:353496..353591
RNA-Seq ExpressionMS003088
SyntenyMS003088
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADQ42094.1 photosystem II protein D1, partial [Dichanthelium scoparium]7.7e-0577.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHEHNAHNFP DL ALE+ S+N
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
AKI84881.1 photosystem II protein D1 [Geranium subcaulescens]1.3e-0477.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL A+E+LSIN
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
KAF7022115.1 hypothetical protein CFC21_034946 [Triticum aestivum]1.0e-0477.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHEHNAHNFP DL A+E+ SIN
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
YP_009766151.1 photosystem II protein D1 [Afzelia quanzensis]2.9e-0477.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL A+E LSIN
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
YP_009766739.1 photosystem II protein D1 [Intsia bijuga]1.0e-0477.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL A+E+LSIN
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
TrEMBL top hitse value%identityAlignment
A0A0G2YIE5 Photosystem II protein D16.4e-0577.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL A+E+LSIN
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
A0A3B6KN25 Uncharacterized protein4.9e-0577.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHEHNAHNFP DL A+E+ SIN
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
A0A3B6MI93 Photosystem II protein D14.9e-0577.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHEHNAHNFP DL A+E+ SIN
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
A0A6H0E5N2 Photosystem II protein D14.9e-0577.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL A+E+LSIN
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
E5FAQ5 Photosystem II protein D1 (Fragment)3.7e-0577.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHEHNAHNFP DL ALE+ S+N
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
SwissProt top hitse value%identityAlignment
A1E9Y8 Photosystem II protein D15.0e-0777.42Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL ALE+ SIN
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
A8Y9F0 Photosystem II protein D18.6e-0774.19Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL ALE+ S+N
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
P0C432 Photosystem II protein D18.6e-0774.19Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL ALE+ S+N
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
P0C433 Photosystem II protein D18.6e-0774.19Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL ALE+ S+N
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
Q6ENJ7 Photosystem II protein D18.6e-0774.19Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL ALE+ S+N
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
Arabidopsis top hitse value%identityAlignment
ATCG00020.1 photosystem II reaction center protein A8.8e-0770.97Show/hide
Query:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN
        NR N GMEVMHE NAHNFP DL A+E  S N
Subjt:  NRVNFGMEVMHEHNAHNFPPDLPALEILSIN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACCGCGTTAATTTTGGTATGGAAGTTATGCATGAACATAACGCTCACAACTTCCCTCCAGACCTACCTGCTCTTGAAATTCTATCTATCAATAGA
mRNA sequenceShow/hide mRNA sequence
AACCGCGTTAATTTTGGTATGGAAGTTATGCATGAACATAACGCTCACAACTTCCCTCCAGACCTACCTGCTCTTGAAATTCTATCTATCAATAGA
Protein sequenceShow/hide protein sequence
NRVNFGMEVMHEHNAHNFPPDLPALEILSINR