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MS003115 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003115
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear pore membrane glycoprotein 210-like
Genome locationscaffold234:508638..510400
RNA-Seq ExpressionMS003115
SyntenyMS003115
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578668.1 hypothetical protein SDJN03_23116, partial [Cucurbita argyrosperma subsp. sororia]4.2e-4695.83Show/hide
Query:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        LQ+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYL+NLLEKS
Subjt:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
XP_004142788.1 uncharacterized protein LOC101221627 [Cucumis sativus]5.4e-4696.84Show/hide
Query:  QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Subjt:  QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
XP_008458808.1 PREDICTED: uncharacterized protein LOC103498107 [Cucumis melo]5.4e-4696.84Show/hide
Query:  QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Subjt:  QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
XP_022133646.1 uncharacterized protein LOC111006184 [Momordica charantia]2.6e-48100Show/hide
Query:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
Subjt:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
XP_022993339.1 uncharacterized protein LOC111489380 [Cucurbita maxima]1.6e-4594.79Show/hide
Query:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        LQ+ CRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYL+NLLEKS
Subjt:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
TrEMBL top hitse value%identityAlignment
A0A0A0KP15 Uncharacterized protein2.6e-4696.84Show/hide
Query:  QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Subjt:  QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
A0A1S3C8Q2 uncharacterized protein LOC1034981072.6e-4696.84Show/hide
Query:  QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Subjt:  QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
A0A6J1BVQ0 uncharacterized protein LOC1110061841.3e-48100Show/hide
Query:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
Subjt:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
A0A6J1FGM6 uncharacterized protein LOC1114453151.3e-4593.75Show/hide
Query:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        LQ+ CRRK+KERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYL+NLLEKS
Subjt:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
A0A6J1JZX4 uncharacterized protein LOC1114893807.7e-4694.79Show/hide
Query:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        LQ+ CRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RYQLRKGKYEP+EKRLDVLSTGRYILNLYL+NLLEKS
Subjt:  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G40500.1 unknown protein5.3e-3976.29Show/hide
Query:  LQVSCRRKEKERN-NFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        LQ++CR+KEK R+ +  PYKVIEITPPPK+LGIRC P NLQCGE+V IEGQTYTISAVTHRYQLRKGKYEP+E+RLDVLS  RY+LNLY +NLL+ S
Subjt:  LQVSCRRKEKERN-NFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
AT5G40500.2 unknown protein5.3e-3976.29Show/hide
Query:  LQVSCRRKEKERN-NFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
        LQ++CR+KEK R+ +  PYKVIEITPPPK+LGIRC P NLQCGE+V IEGQTYTISAVTHRYQLRKGKYEP+E+RLDVLS  RY+LNLY +NLL+ S
Subjt:  LQVSCRRKEKERN-NFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCCAAGTTTCTTGCAGAAGGAAAGAAAAGGAGCGCAACAATTTCGACCCGTACAAAGTCATTGAAATCACTCCTCCGCCGAAGAATCTCGGCATTCGCTGCTTTCCGCC
CAACTTACAATGTGGGGAGAGTGTGACAATAGAAGGCCAAACATACACCATCTCAGCTGTAACTCATCGCTATCAGCTCAGGAAGGGGAAGTATGAGCCAACTGAAAAGA
GACTTGATGTTTTGTCCACAGGGAGGTATATATTGAACTTGTATCTAGAAAATTTATTAGAAAAATCT
mRNA sequenceShow/hide mRNA sequence
CTCCAAGTTTCTTGCAGAAGGAAAGAAAAGGAGCGCAACAATTTCGACCCGTACAAAGTCATTGAAATCACTCCTCCGCCGAAGAATCTCGGCATTCGCTGCTTTCCGCC
CAACTTACAATGTGGGGAGAGTGTGACAATAGAAGGCCAAACATACACCATCTCAGCTGTAACTCATCGCTATCAGCTCAGGAAGGGGAAGTATGAGCCAACTGAAAAGA
GACTTGATGTTTTGTCCACAGGGAGGTATATATTGAACTTGTATCTAGAAAATTTATTAGAAAAATCT
Protein sequenceShow/hide protein sequence
LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS