; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003119 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003119
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOB domain-containing protein
Genome locationscaffold234:540974..541315
RNA-Seq ExpressionMS003119
SyntenyMS003119
Gene Ontology termsNA
InterPro domainsIPR004883 - Lateral organ boundaries, LOB


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037575.1 LOB domain-containing protein 25 [Cucumis melo var. makuwa]2.2e-5493.81Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRYS
        ELDATNADLVRY+
Subjt:  ELDATNADLVRYS

KAE8648553.1 hypothetical protein Csa_009000 [Cucumis sativus]2.2e-5493.81Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRYS
        ELDATNADLVRY+
Subjt:  ELDATNADLVRYS

XP_011655399.1 LOB domain-containing protein 25 [Cucumis sativus]2.2e-5493.81Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRYS
        ELDATNADLVRY+
Subjt:  ELDATNADLVRYS

XP_022134199.1 LOB domain-containing protein 25-like [Momordica charantia]3.7e-5798.25Show/hide
Query:  CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQ
        CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKF NVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQ
Subjt:  CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQ

Query:  KELDATNADLVRYS
        KELDATN DLVRYS
Subjt:  KELDATNADLVRYS

XP_038890699.1 LOB domain-containing protein 25-like [Benincasa hispida]1.0e-5494.69Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        +SSSYSNSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRYS
        ELDATNADLVRY+
Subjt:  ELDATNADLVRYS

TrEMBL top hitse value%identityAlignment
A0A0A0KSE8 LOB domain-containing protein1.1e-5493.81Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRYS
        ELDATNADLVRY+
Subjt:  ELDATNADLVRYS

A0A1S3C8P8 LOB domain-containing protein 251.1e-5493.81Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRYS
        ELDATNADLVRY+
Subjt:  ELDATNADLVRYS

A0A5A7T800 LOB domain-containing protein 251.1e-5493.81Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRYS
        ELDATNADLVRY+
Subjt:  ELDATNADLVRYS

A0A6J1BY47 LOB domain-containing protein 25-like1.8e-5798.25Show/hide
Query:  CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQ
        CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKF NVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQ
Subjt:  CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQ

Query:  KELDATNADLVRYS
        KELDATN DLVRYS
Subjt:  KELDATNADLVRYS

A0A6J1JRR4 LOB domain-containing protein 25-like4.1e-5492.92Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        SSSSYSNSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+L+EV PHQREDAVNSLAYEAEARMKDPVYGCVGAIS+LQR V+RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRYS
        ELDATNADLVRY+
Subjt:  ELDATNADLVRYS

SwissProt top hitse value%identityAlignment
A2WXT0 LOB domain-containing protein 68.8e-3863.55Show/hide
Query:  SNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDAT
        + SPCAACKFLRRKC  +C+FAPYFPP+ P KF +VH++FGASNV+K+LNE+ P+QREDAVNSLAYEA+ R++DPVYGCV  IS+LQR++ +LQ++L   
Subjt:  SNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDAT

Query:  NADLVRY
          +L +Y
Subjt:  NADLVRY

O04479 Protein ASYMMETRIC LEAVES 25.0e-4167.57Show/hide
Query:  SSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKE
        +SS +NSPCAACKFLRRKC  EC+FAPYFPP++P KFANVHK+FGASNV+K+LNE+ P QREDAVNSLAYEA+ R++DPVYGCVG IS+LQ  + +LQ +
Subjt:  SSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKE

Query:  LDATNADLVRY
        L    ++L +Y
Subjt:  LDATNADLVRY

Q8L8Q3 LOB domain-containing protein 253.7e-5285.59Show/hide
Query:  SSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKEL
        S+Y+NSPCAACKFLRRKC ++C+FAPYFPPEEPTKFANVH+IFGASNVSKIL+EV PHQREDAVNSLAYEAEAR+KDPVYGCVGAISVLQR VLRLQ+EL
Subjt:  SSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKEL

Query:  DATNADLVRYS
        + TNADL+RY+
Subjt:  DATNADLVRYS

Q8LQH4 LOB domain-containing protein 68.8e-3863.55Show/hide
Query:  SNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDAT
        + SPCAACKFLRRKC  +C+FAPYFPP+ P KF +VH++FGASNV+K+LNE+ P+QREDAVNSLAYEA+ R++DPVYGCV  IS+LQR++ +LQ++L   
Subjt:  SNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDAT

Query:  NADLVRY
          +L +Y
Subjt:  NADLVRY

Q9FML4 Protein LATERAL ORGAN BOUNDARIES1.4e-4883.04Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PHQREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRY
        ELDA NADL  Y
Subjt:  ELDATNADLVRY

Arabidopsis top hitse value%identityAlignment
AT3G27650.1 LOB domain-containing protein 252.6e-5385.59Show/hide
Query:  SSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKEL
        S+Y+NSPCAACKFLRRKC ++C+FAPYFPPEEPTKFANVH+IFGASNVSKIL+EV PHQREDAVNSLAYEAEAR+KDPVYGCVGAISVLQR VLRLQ+EL
Subjt:  SSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKEL

Query:  DATNADLVRYS
        + TNADL+RY+
Subjt:  DATNADLVRYS

AT5G63090.1 Lateral organ boundaries (LOB) domain family protein1.0e-4983.04Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PHQREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRY
        ELDA NADL  Y
Subjt:  ELDATNADLVRY

AT5G63090.2 Lateral organ boundaries (LOB) domain family protein1.0e-4983.04Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PHQREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRY
        ELDA NADL  Y
Subjt:  ELDATNADLVRY

AT5G63090.3 Lateral organ boundaries (LOB) domain family protein1.0e-4983.04Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PHQREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRY
        ELDA NADL  Y
Subjt:  ELDATNADLVRY

AT5G63090.4 Lateral organ boundaries (LOB) domain family protein1.0e-4983.04Show/hide
Query:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK
        SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PHQREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQK
Subjt:  SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQK

Query:  ELDATNADLVRY
        ELDA NADL  Y
Subjt:  ELDATNADLVRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTTCAAGTTCAAGCTACTCGAACTCGCCATGTGCGGCATGCAAGTTCTTGAGAAGAAAATGTTTAGCAGAATGCATATTCGCGCCCTACTTCCCACCCGAGGAGCCGAC
CAAATTCGCCAACGTCCACAAGATATTCGGAGCGAGCAATGTGAGCAAGATCCTCAACGAGGTCCAGCCCCACCAGCGGGAGGACGCTGTAAACTCTCTTGCCTACGAGG
CTGAGGCCCGCATGAAAGACCCTGTCTACGGCTGCGTCGGTGCCATCTCCGTCCTCCAGCGTCACGTCCTTCGTCTTCAGAAGGAACTCGACGCCACCAATGCTGATTTG
GTTCGATACTCC
mRNA sequenceShow/hide mRNA sequence
TGTTCAAGTTCAAGCTACTCGAACTCGCCATGTGCGGCATGCAAGTTCTTGAGAAGAAAATGTTTAGCAGAATGCATATTCGCGCCCTACTTCCCACCCGAGGAGCCGAC
CAAATTCGCCAACGTCCACAAGATATTCGGAGCGAGCAATGTGAGCAAGATCCTCAACGAGGTCCAGCCCCACCAGCGGGAGGACGCTGTAAACTCTCTTGCCTACGAGG
CTGAGGCCCGCATGAAAGACCCTGTCTACGGCTGCGTCGGTGCCATCTCCGTCCTCCAGCGTCACGTCCTTCGTCTTCAGAAGGAACTCGACGCCACCAATGCTGATTTG
GTTCGATACTCC
Protein sequenceShow/hide protein sequence
CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADL
VRYS