; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003146 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003146
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA exonuclease 4
Genome locationscaffold234:720363..722597
RNA-Seq ExpressionMS003146
SyntenyMS003146
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013087 - Zinc finger C2H2-type
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578645.1 hypothetical protein SDJN03_23093, partial [Cucurbita argyrosperma subsp. sororia]1.4e-15986.77Show/hide
Query:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA
        +RHKCAACFRQFNKIEHLVDHMRTSFHS HEP CA+CKKHCRSLDSLREHLIGPLPKQECKN+F  RGCKFCLAILDS YSQRLHQERCQFS VNSGLLA
Subjt:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA

Query:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY
        RLANLGIRDGS  +DGGR R +G VALACKYV GGGDGSLD+CAKVCLIDE+ENVIFYSYVKPIIPVTNYR+E TGIRPEHLRDAMPLKQVQKKIQ+ILY
Subjt:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY

Query:  NGGEKARVLVGHGVEDDLKRLQIGYP--IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKNNFGIWRQNELERMTPEHMLDISRSD
        NGGEKARVLVGH VEDDLKRLQIGYP  +IRF+IQNG+QDPYE+CV  MRLYKRMRSQVH+IE +PMASDPQNKNNF  WR+NELERM+PE ML+ISRSD
Subjt:  NGGEKARVLVGHGVEDDLKRLQIGYP--IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKNNFGIWRQNELERMTPEHMLDISRSD

Query:  YYCWCLDLRI
        YYCWC+DLRI
Subjt:  YYCWCLDLRI

XP_022134351.1 RNA exonuclease 4 isoform X1 [Momordica charantia]2.2e-17691.04Show/hide
Query:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA
        +RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIF TRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA
Subjt:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA

Query:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY
        RLANLGIRD SIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY
Subjt:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY

Query:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR---------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKN
        NGGEKARVLVGHGVEDDLKRLQIGYPIIR                           FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKN
Subjt:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR---------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKN

Query:  NFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
        NFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
Subjt:  NFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI

XP_022134352.1 RNA exonuclease 4 isoform X2 [Momordica charantia]2.8e-17691.32Show/hide
Query:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR
        RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIF TRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR
Subjt:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR

Query:  LANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN
        LANLGIRD SIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN
Subjt:  LANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN

Query:  GGEKARVLVGHGVEDDLKRLQIGYPIIR---------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKNN
        GGEKARVLVGHGVEDDLKRLQIGYPIIR                           FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKNN
Subjt:  GGEKARVLVGHGVEDDLKRLQIGYPIIR---------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKNN

Query:  FGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
        FGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
Subjt:  FGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI

XP_022938612.1 RNA exonuclease 4-like [Cucurbita moschata]8.0e-15579.23Show/hide
Query:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA
        +RHKCAACFRQFNKIEHLVDHMRTSFHS HEP CA+CKKHCRSLDSLREHLIGPLPKQECKN+F  RGCKFCLAILDS YSQRLHQERCQFS VNSGLLA
Subjt:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA

Query:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY
        RLANLGIRDGS  +DGGR R +G VALACKYV GGGDGSLD+CAKVCLIDE+ENVIFYSYVKPIIPVTNYR+E TGIRPEHLRDAMPLKQVQKKIQ+ILY
Subjt:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY

Query:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQN
        NGGEKARVLVGH VEDDLKRLQIGYP I                              F+IQNG+QDPYE+CV  MRLYKRMRSQVH+IE +PMASDPQN
Subjt:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQN

Query:  KNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
        KNNF  WR++ELERM+PE ML+ISRSDYYCWC+DLRI
Subjt:  KNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI

XP_022993635.1 RNA exonuclease 4-like [Cucurbita maxima]1.4e-15478.93Show/hide
Query:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA
        +RHKCAACFRQFNKIEHLVDHMRTSFHS HEP CA+CKKHCRSLDSLREHLIGPLPKQECKN+F  RGCKFCLAILDS YSQRLHQERCQFS VNSGLLA
Subjt:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA

Query:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY
        RLANLGIRDGS  +DGGR R +G VALACKYV GGGDGSLD+CAKVCLIDE+ENVIFYSYVKP IPVTNYR+ETTGIRPEH+RDAMPLKQVQKKIQ+ILY
Subjt:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY

Query:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQN
        NGGEKARVLVGH VEDDLKRLQIGYP I                              F+IQNG+QDPYE+CV  MRLYKRMRSQVH+IE +PMASDPQN
Subjt:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQN

Query:  KNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
        KNNF  WR++ELERM+PE ML+ISRSDYYCWC+DLRI
Subjt:  KNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI

TrEMBL top hitse value%identityAlignment
A0A1S3C947 RNA exonuclease 47.4e-13869.23Show/hide
Query:  DTNFLCNRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGV
        D +   +RHKCAACFRQFNKIEHLVDHMRTSFHS HEP CAICKKHCRSLDSLREHLIGPLPKQEC+NIF TRGCKFCLAILDS YSQRLHQERCQFS V
Subjt:  DTNFLCNRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGV

Query:  NSGLLARLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKK
        NSGLLAR ANLGIRDGS ++D GR R +G +ALACKYVGGG DGSLDICAKVCL+DE ENVIFYSYVKPIIPVTNYR+E TG+RPEHLRDAMPLKQVQKK
Subjt:  NSGLLARLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKK

Query:  IQEILYNGGE----------KARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQ-DPYEDCVASMRLYKRMR
        IQE L NG +          KAR+LVGHG+++ L  LQI YP I                              ++++NG + + YE+CVA+MRLY +M+
Subjt:  IQEILYNGGE----------KARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQ-DPYEDCVASMRLYKRMR

Query:  SQVHKIEDYPMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD
        SQVHK E+YP+ASDP NK NF IW+Q ELE+MTP+ +L ISRSDYYCWCLD
Subjt:  SQVHKIEDYPMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD

A0A6J1BXL4 RNA exonuclease 41.1e-17691.04Show/hide
Query:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA
        +RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIF TRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA
Subjt:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA

Query:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY
        RLANLGIRD SIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY
Subjt:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY

Query:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR---------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKN
        NGGEKARVLVGHGVEDDLKRLQIGYPIIR                           FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKN
Subjt:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR---------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKN

Query:  NFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
        NFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
Subjt:  NFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI

A0A6J1BZE0 RNA exonuclease 41.4e-17691.32Show/hide
Query:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR
        RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIF TRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR
Subjt:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR

Query:  LANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN
        LANLGIRD SIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN
Subjt:  LANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN

Query:  GGEKARVLVGHGVEDDLKRLQIGYPIIR---------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKNN
        GGEKARVLVGHGVEDDLKRLQIGYPIIR                           FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKNN
Subjt:  GGEKARVLVGHGVEDDLKRLQIGYPIIR---------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKNN

Query:  FGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
        FGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
Subjt:  FGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI

A0A6J1FEK0 RNA exonuclease 43.9e-15579.23Show/hide
Query:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA
        +RHKCAACFRQFNKIEHLVDHMRTSFHS HEP CA+CKKHCRSLDSLREHLIGPLPKQECKN+F  RGCKFCLAILDS YSQRLHQERCQFS VNSGLLA
Subjt:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA

Query:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY
        RLANLGIRDGS  +DGGR R +G VALACKYV GGGDGSLD+CAKVCLIDE+ENVIFYSYVKPIIPVTNYR+E TGIRPEHLRDAMPLKQVQKKIQ+ILY
Subjt:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY

Query:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQN
        NGGEKARVLVGH VEDDLKRLQIGYP I                              F+IQNG+QDPYE+CV  MRLYKRMRSQVH+IE +PMASDPQN
Subjt:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQN

Query:  KNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
        KNNF  WR++ELERM+PE ML+ISRSDYYCWC+DLRI
Subjt:  KNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI

A0A6J1JZ30 RNA exonuclease 46.6e-15578.93Show/hide
Query:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA
        +RHKCAACFRQFNKIEHLVDHMRTSFHS HEP CA+CKKHCRSLDSLREHLIGPLPKQECKN+F  RGCKFCLAILDS YSQRLHQERCQFS VNSGLLA
Subjt:  NRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLA

Query:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY
        RLANLGIRDGS  +DGGR R +G VALACKYV GGGDGSLD+CAKVCLIDE+ENVIFYSYVKP IPVTNYR+ETTGIRPEH+RDAMPLKQVQKKIQ+ILY
Subjt:  RLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILY

Query:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQN
        NGGEKARVLVGH VEDDLKRLQIGYP I                              F+IQNG+QDPYE+CV  MRLYKRMRSQVH+IE +PMASDPQN
Subjt:  NGGEKARVLVGHGVEDDLKRLQIGYPIIR-----------------------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQN

Query:  KNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI
        KNNF  WR++ELERM+PE ML+ISRSDYYCWC+DLRI
Subjt:  KNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI

SwissProt top hitse value%identityAlignment
Q08237 RNA exonuclease 47.6e-1527.54Show/hide
Query:  VALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIG
        +A+ C++VG G +G     A++ +++   +V+   +VKP   V  +R   +GI+PEH+++A+  K+ QKK  +IL     + R+LVGH ++ DL+ L + 
Subjt:  VALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIG

Query:  YP-------------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKI
        +P                               +++  IQ G     ED  A+M LYK+ +++  KI
Subjt:  YP-------------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKI

Q6CMT3 RNA exonuclease 47.6e-1528.99Show/hide
Query:  VALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIG
        V++ C++VG G DG     A+V +++   NV+   +V+P  PVT++R   +GI+P H+ +A+  +  QK++  +L     K R+LVGH V  DL  L + 
Subjt:  VALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIG

Query:  YP-------------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIED
        +P                               I++ DIQ+G     ED  A+M LYK  + +  K+ +
Subjt:  YP-------------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIED

Q6FQA0 RNA exonuclease 49.9e-1529.52Show/hide
Query:  VALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIG
        +A+ C++VG G +G     A+V L++   NV+   +VKP   VT++R   +GI P+H+++A+  KQ Q+++ +IL     K ++LVGH V+ DL+ L + 
Subjt:  VALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIG

Query:  YP-------------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHK
        +P                               I+  DIQ+G     ED  A+M +YK  +    K
Subjt:  YP-------------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHK

Q91560 RNA exonuclease 42.0e-1533.96Show/hide
Query:  TGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRL
        T TVA+ C+ VG G DG   I A+V +++     ++  YVKP   VT+YR   +GIRPE ++   P K VQK++ EIL     + R LVGH V +DLK L
Subjt:  TGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRL

Query:  QIGYP------------------------------IIRFDIQNGIQDPYEDCVASMRLY
         + +P                              I+   +Q G     +D  A+MRLY
Subjt:  QIGYP------------------------------IIRFDIQNGIQDPYEDCVASMRLY

Q9GZR2 RNA exonuclease 45.8e-1536.23Show/hide
Query:  GVNSGLLARLANLGIRDGSIVVDGGRARATG----TVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPL
        G  +  +AR   LG  +GS+ +   + +A G     +AL C+ VG G  G   + A+V ++++    ++  YVKP  PVT+YR   +GIRPE+L+    L
Subjt:  GVNSGLLARLANLGIRDGSIVVDGGRARATG----TVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPL

Query:  KQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIGYP
        + VQK++ E+L     K R+LVGH + +DLK L + +P
Subjt:  KQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIGYP

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein1.0e-6739.35Show/hide
Query:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGP--LPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLL
        RH+C AC++ FN+ EHLV+HM+ S+HS+H+P C +C KHC+S +S+REHL  P  L K  CK IF  RGC  CL I +  ++   H+ +C  S       
Subjt:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGP--LPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLL

Query:  ARLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEIL
          L     R+ S  + G R +A   +AL C+ VGGG DG++D CA VCL+D+ ENVIF ++V+P++PVT+YR E TG+  E L+D MPL+ V++++   L
Subjt:  ARLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEIL

Query:  ---YNGGEKARVLVGHGVEDDLKRLQIGYP-----------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMAS
            N G    +LVGH +  D+  L++ YP                              + + IQ G  + YEDCV++MRLYKRMR Q H      + S
Subjt:  ---YNGGEKARVLVGHGVEDDLKRLQIGYP-----------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMAS

Query:  DPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD
             N     +Q++LE+M  E +   S S+Y CWCLD
Subjt:  DPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD

AT2G48100.2 Exonuclease family protein1.0e-6739.35Show/hide
Query:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGP--LPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLL
        RH+C AC++ FN+ EHLV+HM+ S+HS+H+P C +C KHC+S +S+REHL  P  L K  CK IF  RGC  CL I +  ++   H+ +C  S       
Subjt:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGP--LPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLL

Query:  ARLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEIL
          L     R+ S  + G R +A   +AL C+ VGGG DG++D CA VCL+D+ ENVIF ++V+P++PVT+YR E TG+  E L+D MPL+ V++++   L
Subjt:  ARLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEIL

Query:  ---YNGGEKARVLVGHGVEDDLKRLQIGYP-----------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMAS
            N G    +LVGH +  D+  L++ YP                              + + IQ G  + YEDCV++MRLYKRMR Q H      + S
Subjt:  ---YNGGEKARVLVGHGVEDDLKRLQIGYP-----------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMAS

Query:  DPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD
             N     +Q++LE+M  E +   S S+Y CWCLD
Subjt:  DPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD

AT2G48100.3 Exonuclease family protein1.0e-6739.35Show/hide
Query:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGP--LPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLL
        RH+C AC++ FN+ EHLV+HM+ S+HS+H+P C +C KHC+S +S+REHL  P  L K  CK IF  RGC  CL I +  ++   H+ +C  S       
Subjt:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGP--LPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLL

Query:  ARLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEIL
          L     R+ S  + G R +A   +AL C+ VGGG DG++D CA VCL+D+ ENVIF ++V+P++PVT+YR E TG+  E L+D MPL+ V++++   L
Subjt:  ARLANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEIL

Query:  ---YNGGEKARVLVGHGVEDDLKRLQIGYP-----------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMAS
            N G    +LVGH +  D+  L++ YP                              + + IQ G  + YEDCV++MRLYKRMR Q H      + S
Subjt:  ---YNGGEKARVLVGHGVEDDLKRLQIGYP-----------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMAS

Query:  DPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD
             N     +Q++LE+M  E +   S S+Y CWCLD
Subjt:  DPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD

AT3G27970.1 Exonuclease family protein1.0e-12361.11Show/hide
Query:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR
        R+KCAAC+RQFNK+EHLV+HM+ S+HS HEP C +CKKHCRS +SLREHLIGPLPKQECKNIF  RGC+FC+ IL+SP S+R+HQERCQFS VNSGL  R
Subjt:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR

Query:  LANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN
        +A LG+RD   ++D   +R+   VAL+CK VGGG DGSLD+CA+VC+ DE++NVIF++YVKP + VT+YR+ETTGIRPE+LRDAMPLKQVQ+KIQE L N
Subjt:  LANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN

Query:  G---------GEKARVLVGHGVEDDLKRLQIGYP-----------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDY
        G         G KAR+LVGHG++ DL RLQ+ YP                              + +D+  GIQDPYEDCVA+MRLY RMR Q HKIE Y
Subjt:  G---------GEKARVLVGHGVEDDLKRLQIGYP-----------------------------IIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDY

Query:  PMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD
        P+A+D QN++N   WRQ+E ERM+P+ ML ISRSDYYCWCLD
Subjt:  PMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD

AT5G40310.1 Exonuclease family protein2.1e-12160.53Show/hide
Query:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR
        R+KC  C+RQFNK EHLV+HMR S+HSVHEP C IC KHCRS DSLREHLIGPLPKQECKNIF  RGC+FCL IL+SP ++R+HQERCQ S V SGL+ R
Subjt:  RHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLAR

Query:  LANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN
        +A LG+R+ S  +D   +R+   VAL+CK VGGG DGSLD+CA+VC+ DE+ENV+F++YVKP IPVTNYR+E TGIRPE+LRDAM LK  Q+K+QE L N
Subjt:  LANLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYN

Query:  G---------GEKARVLVGHGVEDDLKRLQIGY------------PIIR-----------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDY
        G           KAR+LVGHG+++ L  LQ+ Y            P+++                 +DI  GIQDPYEDCVA+MRLY RMR Q H+ E Y
Subjt:  G---------GEKARVLVGHGVEDDLKRLQIGY------------PIIR-----------------FDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDY

Query:  PMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD
        P+ASD QN NNF  WRQNELERM+PE +LD+SRSDYYCWCLD
Subjt:  PMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGACACAAATTTTTTGTGTAACAGGCACAAGTGTGCAGCTTGCTTCAGGCAATTCAACAAGATAGAGCACTTGGTAGACCATATGAGAACCTCATTTCACTCAGTTCA
TGAACCCATTTGTGCCATTTGCAAGAAACACTGCAGATCTCTTGATTCTCTCAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAATGCAAAAACATCTTCATTACTC
GAGGATGCAAATTCTGCTTGGCCATCTTGGACAGTCCTTACTCACAAAGGCTCCACCAAGAAAGATGCCAATTTTCGGGTGTAAATTCTGGGCTTCTTGCTCGTCTGGCC
AACTTGGGAATTCGTGACGGTTCGATCGTCGTCGACGGCGGCAGAGCTCGAGCCACCGGCACCGTCGCATTGGCTTGCAAATATGTAGGCGGCGGCGGCGATGGGTCGCT
GGACATCTGCGCCAAGGTCTGCCTTATTGATGAGACCGAAAATGTGATCTTCTATAGCTATGTCAAGCCAATCATTCCTGTCACAAATTATCGGTTTGAAACGACCGGTA
TTCGTCCAGAACATTTGAGAGATGCAATGCCGCTGAAGCAAGTGCAGAAGAAGATTCAAGAAATCCTCTACAATGGAGGTGAGAAGGCTAGGGTTCTTGTGGGTCACGGT
GTGGAAGACGATCTCAAACGCCTCCAAATTGGATATCCAATCATAAGATTTGACATTCAAAATGGGATACAAGATCCTTATGAAGATTGTGTTGCCAGCATGAGGCTTTA
CAAGAGAATGAGATCACAAGTGCACAAAATAGAGGACTATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGGAATTTGGAGGCAAAATGAGCTCGAGAGGATGA
CCCCAGAACACATGTTGGACATCTCCAGGTCTGATTACTATTGTTGGTGCTTGGACTTGAGGATT
mRNA sequenceShow/hide mRNA sequence
TTTGACACAAATTTTTTGTGTAACAGGCACAAGTGTGCAGCTTGCTTCAGGCAATTCAACAAGATAGAGCACTTGGTAGACCATATGAGAACCTCATTTCACTCAGTTCA
TGAACCCATTTGTGCCATTTGCAAGAAACACTGCAGATCTCTTGATTCTCTCAGAGAACATCTCATTGGGCCACTGCCAAAACAAGAATGCAAAAACATCTTCATTACTC
GAGGATGCAAATTCTGCTTGGCCATCTTGGACAGTCCTTACTCACAAAGGCTCCACCAAGAAAGATGCCAATTTTCGGGTGTAAATTCTGGGCTTCTTGCTCGTCTGGCC
AACTTGGGAATTCGTGACGGTTCGATCGTCGTCGACGGCGGCAGAGCTCGAGCCACCGGCACCGTCGCATTGGCTTGCAAATATGTAGGCGGCGGCGGCGATGGGTCGCT
GGACATCTGCGCCAAGGTCTGCCTTATTGATGAGACCGAAAATGTGATCTTCTATAGCTATGTCAAGCCAATCATTCCTGTCACAAATTATCGGTTTGAAACGACCGGTA
TTCGTCCAGAACATTTGAGAGATGCAATGCCGCTGAAGCAAGTGCAGAAGAAGATTCAAGAAATCCTCTACAATGGAGGTGAGAAGGCTAGGGTTCTTGTGGGTCACGGT
GTGGAAGACGATCTCAAACGCCTCCAAATTGGATATCCAATCATAAGATTTGACATTCAAAATGGGATACAAGATCCTTATGAAGATTGTGTTGCCAGCATGAGGCTTTA
CAAGAGAATGAGATCACAAGTGCACAAAATAGAGGACTATCCAATGGCTTCTGACCCACAAAACAAAAATAACTTTGGAATTTGGAGGCAAAATGAGCTCGAGAGGATGA
CCCCAGAACACATGTTGGACATCTCCAGGTCTGATTACTATTGTTGGTGCTTGGACTTGAGGATT
Protein sequenceShow/hide protein sequence
FDTNFLCNRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPICAICKKHCRSLDSLREHLIGPLPKQECKNIFITRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLARLA
NLGIRDGSIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNYRFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHG
VEDDLKRLQIGYPIIRFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIEDYPMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI