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MS003150 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003150
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase ATL4-like
Genome locationscaffold234:745422..745580
RNA-Seq ExpressionMS003150
SyntenyMS003150
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4305566.1 unnamed protein product [Prunus armeniaca]1.0e-1778.43Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE
        PVDCAVCL  F+MG+KCR+LPLCKHSFHA+CVD WLL TPICPICR+ T E
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE

KAE8021557.1 hypothetical protein FH972_007437 [Carpinus fangiana]7.7e-1878.85Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES
        PVDCAVCL  F+MGDKCR+LP CKHSFHA+CVD WLL TPICPICRT+  ES
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES

KAG6578641.1 putative RING-H2 finger protein ATL50, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2184.91Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
        PVDCAVCLGKF+MG+KCR+LP+CKHSFHA+CVDEWLL+TP CPICRT+TLESL
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL

XP_022134384.1 E3 ubiquitin-protein ligase ATL4-like [Momordica charantia]6.5e-25100Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
        PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL

XP_023551528.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]5.7e-2183.02Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
        PVDCAVCLGKF+MG+KCR+LP+CKHSFHA+CVDEWLL+TP CPICRT+TL SL
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL

TrEMBL top hitse value%identityAlignment
A0A2N9ED16 RING-type domain-containing protein3.7e-1885.11Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRT
        PVDCAVCL  F+MGDKCR+LP+CKHSFHA+CVDEWLL TPICPICRT
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRT

A0A314Z383 RING-H2 finger protein ATL39-like4.9e-1878.43Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE
        PVDCAVCL  F+MG+KCR+LPLCKHSFHA+CVD WLL TPICPICR+ T E
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE

A0A5N6QVF9 RING-type domain-containing protein3.7e-1878.85Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES
        PVDCAVCL  F+MGDKCR+LP CKHSFHA+CVD WLL TPICPICRT+  ES
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES

A0A6J1BYM3 E3 ubiquitin-protein ligase ATL4-like3.2e-25100Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
        PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL

A0A6P5SSW5 RING-H2 finger protein ATL39-like4.9e-1878.43Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE
        PVDCAVCL  F+MG+KCR+LPLCKHSFHA+CVD WLL TPICPICR+ T E
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLE

SwissProt top hitse value%identityAlignment
Q67YI6 RING-H2 finger protein ATL651.0e-1262Show/hide
Query:  DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES
        DCAVCL +FE GD  R LPLC H+FH  C+DEWL   P CP+CRT  L S
Subjt:  DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES

Q7X843 RING-H2 finger protein ATL486.6e-1256.52Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICR
        P DCAVCL +F   DK R+LP+C H+FH  C+D WLL    CP+CR
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICR

Q940Q4 RING-H2 finger protein ATL131.0e-1254.72Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
        P DCAVCL +FE  DK R+LP C H+FH  C+D WLL    CP+CR++ L  L
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL

Q9LY41 E3 ubiquitin-protein ligase ATL41.1e-1160Show/hide
Query:  DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRT
        DCAVCL KFE  D+ R+LPLC H+FHA C+D WL+    CP+CR+
Subjt:  DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRT

Q9ZV53 Putative RING-H2 finger protein ATL491.7e-1256Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTL
        P DC VCL +FE  DK R+LP C H+FH  C+D WLL    CP+CR+N L
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTL

Arabidopsis top hitse value%identityAlignment
AT2G18650.1 RING/U-box superfamily protein1.2e-1356Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTL
        P DC VCL +FE  DK R+LP C H+FH  C+D WLL    CP+CR+N L
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTL

AT3G18930.1 RING/U-box superfamily protein7.2e-1462Show/hide
Query:  DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES
        DCAVCL +FE GD  R LPLC H+FH  C+DEWL   P CP+CRT  L S
Subjt:  DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES

AT3G18930.2 RING/U-box superfamily protein7.2e-1462Show/hide
Query:  DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES
        DCAVCL +FE GD  R LPLC H+FH  C+DEWL   P CP+CRT  L S
Subjt:  DCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLES

AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein4.7e-1356.52Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICR
        P DCAVCL +F   DK R+LP+C H+FH  C+D WLL    CP+CR
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICR

AT4G30400.1 RING/U-box superfamily protein7.2e-1454.72Show/hide
Query:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL
        P DCAVCL +FE  DK R+LP C H+FH  C+D WLL    CP+CR++ L  L
Subjt:  PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTGTGGATTGTGCTGTTTGCTTGGGGAAGTTTGAGATGGGGGACAAGTGTAGAATGTTGCCTCTTTGCAAGCATAGCTTCCATGCTCGTTGTGTGGATGAGTGGCTTTT
GGTCACTCCTATTTGTCCTATTTGTCGGACCAATACTCTTGAGTCGCTC
mRNA sequenceShow/hide mRNA sequence
CCTGTGGATTGTGCTGTTTGCTTGGGGAAGTTTGAGATGGGGGACAAGTGTAGAATGTTGCCTCTTTGCAAGCATAGCTTCCATGCTCGTTGTGTGGATGAGTGGCTTTT
GGTCACTCCTATTTGTCCTATTTGTCGGACCAATACTCTTGAGTCGCTC
Protein sequenceShow/hide protein sequence
PVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPICRTNTLESL