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MS003158 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003158
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA ligase/cyclic nucleotide phosphodiesterase
Genome locationscaffold234:797744..798292
RNA-Seq ExpressionMS003158
SyntenyMS003158
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
InterPro domainsIPR009097 - Cyclic phosphodiesterase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142350.1 uncharacterized protein LOC101208638 [Cucumis sativus]2.5e-9295.08Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PF+EP KVESIVKNFASKQ+PL LSLSSIGSLP+DNNILFLGPAP+ISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQ+VPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN VEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

XP_022134555.1 uncharacterized protein LOC111006773 [Momordica charantia]2.2e-9699.45Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS PFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

XP_022964210.1 uncharacterized protein LOC111464296 [Cucurbita moschata]6.6e-9395.08Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP KVESIVKNFASKQ+PLPLSL+SIGSLPNDNNILFLGPAP+ISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIE GEEYRLGSWIPHCAVAQ+VPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN +EA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

XP_022989855.1 uncharacterized protein LOC111486920 [Cucurbita maxima]1.5e-9294.54Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP KVESIVKNFASKQ+PLPLSL+SIGSLPNDNNILFLGPAP+ISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIE GEEYRLGSWIPHC+VAQ+VPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN +EA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

XP_022993671.1 uncharacterized protein LOC111489594 [Cucurbita maxima]2.5e-9294.54Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP KVESIVKNFASKQ+PLPLSLSSIGSLP+DNN+LFLGPAP+ISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHCAVAQ+VP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN VEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

TrEMBL top hitse value%identityAlignment
A0A5A7T7Y4 RNA ligase/cyclic nucleotide phosphodiesterase1.2e-9295.08Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PF+EP KVESIVKNFASKQ+PL LSLSSIGSLP+DNNILFLGPAP+ISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQ+VPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN VEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

A0A6J1BYL1 uncharacterized protein LOC1110067731.1e-9699.45Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS PFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

A0A6J1HK74 uncharacterized protein LOC1114642963.2e-9395.08Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP KVESIVKNFASKQ+PLPLSL+SIGSLPNDNNILFLGPAP+ISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIE GEEYRLGSWIPHCAVAQ+VPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN +EA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

A0A6J1JNI6 uncharacterized protein LOC1114869207.2e-9394.54Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP KVESIVKNFASKQ+PLPLSL+SIGSLPNDNNILFLGPAP+ISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIE GEEYRLGSWIPHC+VAQ+VPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN +EA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

A0A6J1JWZ6 uncharacterized protein LOC1114895941.2e-9294.54Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP KVESIVKNFASKQ+PLPLSLSSIGSLP+DNN+LFLGPAP+ISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        FQSQLCEAMRKEGIEIGEEYR GSWIPHCAVAQ+VP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN VEA
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G28140.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein4.2e-6969.02Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++  K+E I+K+F+SKQ+P+ LS SSIGS  +D+N LFL P P++SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLL

Query:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
        Q Q QLCE ++KEG EIGEEYR+ SW+P C+VA DVPK+R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN +E+
Subjt:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA

AT3G28140.2 RNA ligase/cyclic nucleotide phosphodiesterase family protein5.5e-5364.71Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++  K+E I+K+F+SKQ+P+ LS SSIGS  +D+N LFL P P++SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLL

Query:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKL
        Q Q QLCE ++KEG EIGEEYR+ SW+P C+VA DVPK+R++E F V     L
Subjt:  QFQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKL

AT5G40190.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein1.3e-7368.85Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ
        MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFS+ F +  ++ES++KNF SKQ+P+ +S S+IGS  +DNN+LFL P P++SLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQ

Query:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA
         Q+QLC+ ++KE ++IGEEYR+ SW+P C VA DVPK+RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGN +E+
Subjt:  FQSQLCEAMRKEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAAGGGTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCCCGCCGTCAAATTAGTACGCAGCTCATCGA
GATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCCTTCGTCGAACCCGCGAAAGTCGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGACCCCTTGCCTTTGT
CCTTATCGTCAATAGGCAGCCTTCCCAATGACAACAACATCCTCTTTCTGGGTCCTGCGCCTACAATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGG
AAAGAAGGAATCGAAATCGGGGAGGAATATCGCCTGGGCTCTTGGATTCCCCATTGCGCTGTTGCTCAGGATGTGCCCAAGGCTCGAATGGCAGAGGCATTTTGTGTTCT
AAGGGATTTGAAGTTGCCAGTTTCCGGGTACGCAATTGATATCGGGTTGGTGGAATTTTCTCCTGTTCGGGAGCTGTTCTCTTTTGTTCTTGGTAACATTGTCGAAGCT
mRNA sequenceShow/hide mRNA sequence
ATGTCACAAGGGTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCCCGCCGTCAAATTAGTACGCAGCTCATCGA
GATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCCTTCGTCGAACCCGCGAAAGTCGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGACCCCTTGCCTTTGT
CCTTATCGTCAATAGGCAGCCTTCCCAATGACAACAACATCCTCTTTCTGGGTCCTGCGCCTACAATTTCACTCCTCCAATTCCAGTCTCAATTGTGCGAAGCAATGAGG
AAAGAAGGAATCGAAATCGGGGAGGAATATCGCCTGGGCTCTTGGATTCCCCATTGCGCTGTTGCTCAGGATGTGCCCAAGGCTCGAATGGCAGAGGCATTTTGTGTTCT
AAGGGATTTGAAGTTGCCAGTTTCCGGGTACGCAATTGATATCGGGTTGGTGGAATTTTCTCCTGTTCGGGAGCTGTTCTCTTTTGTTCTTGGTAACATTGTCGAAGCT
Protein sequenceShow/hide protein sequence
MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFVEPAKVESIVKNFASKQDPLPLSLSSIGSLPNDNNILFLGPAPTISLLQFQSQLCEAMR
KEGIEIGEEYRLGSWIPHCAVAQDVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNIVEA