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MS003181 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003181
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZnMc domain-containing protein
Genome locationscaffold234:934570..934758
RNA-Seq ExpressionMS003181
SyntenyMS003181
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0031012 - extracellular matrix (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001818 - Peptidase M10, metallopeptidase
IPR021190 - Peptidase M10A
IPR024079 - Metallopeptidase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3972001.1 hypothetical protein CMV_004447 [Castanea mollissima]3.3e-1565Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY
        W+VGA PN  D+ +VA+HEIGHLLGL HS  E AIMWP IRP   +GL +DD+ GIKALY
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY

XP_022133608.1 matrix metalloproteinase-9-like [Momordica charantia]1.0e-1665.08Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALYGLP
        W+VGA+   +DV SVA+HEIGHLLGL HS  +EAIMWP I  N VKGL+ DD+AG++ALYG P
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALYGLP

XP_022133610.1 metalloendoproteinase 1-like [Momordica charantia]7.5e-2895.24Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALYGLP
        WTVGARPNC DVMSVAVHEIGHLLGLGHSGAEEAIMWP IRPNAVKGLFQD+VAGIKALYGLP
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALYGLP

XP_030973479.1 metalloendoproteinase 2-MMP-like [Quercus lobata]3.3e-1565Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY
        W+VGA PN  D+ +VA+HEIGHLLGL HS  E AIMWP IRP   +GL +DD+ GIKALY
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY

XP_030973585.1 metalloendoproteinase 2-MMP-like [Quercus lobata]3.3e-1565Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY
        W+VGA PN  D+ +VA+HEIGHLLGL HS  E AIMWP IRP   +GL +DD+ GIKALY
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY

TrEMBL top hitse value%identityAlignment
A0A6J1BVR3 metalloendoproteinase 1-like3.6e-2895.24Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALYGLP
        WTVGARPNC DVMSVAVHEIGHLLGLGHSGAEEAIMWP IRPNAVKGLFQD+VAGIKALYGLP
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALYGLP

A0A6J1BZL4 matrix metalloproteinase-9-like4.9e-1765.08Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALYGLP
        W+VGA+   +DV SVA+HEIGHLLGL HS  +EAIMWP I  N VKGL+ DD+AG++ALYG P
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALYGLP

A0A7N2LW22 ZnMc domain-containing protein1.6e-1565Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY
        W+VGA PN  D+ +VA+HEIGHLLGL HS  E AIMWP IRP   +GL +DD+ GIKALY
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY

A0A7N2LXL1 ZnMc domain-containing protein1.6e-1565Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY
        W+VGA PN  D+ +VA+HEIGHLLGL HS  E AIMWP IRP   +GL +DD+ GIKALY
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY

A0A7N2LXS1 ZnMc domain-containing protein1.6e-1565Show/hide
Query:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY
        W+VGA PN  D+ +VA+HEIGHLLGL HS  E AIMWP IRP   +GL +DD+ GIKALY
Subjt:  WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALY

SwissProt top hitse value%identityAlignment
O04529 Metalloendoproteinase 2-MMP4.3e-1063.46Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG
        D+ SVAVHEIGHLLGLGHS  EE+IM+P I     K  L  DDV GI+ LYG
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG

O23507 Metalloendoproteinase 1-MMP8.6e-1161.54Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG
        D+ SVA HEIGHLLGLGHS  E A+M+P +RP   K  L  DDVAG+  LYG
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG

P29136 Metalloendoproteinase 11.1e-1062.26Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYGL
        D+ SVAVHEIGHLLGLGHS    AIM+P I P   K  L QDD+ GI+ LYG+
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYGL

Q5XF51 Metalloendoproteinase 3-MMP9.6e-1061.54Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG
        D+ SVAVHEIGHLLGLGHS  E +IM+P IR    K  L  DDV G++ LYG
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG

Q8GWW6 Metalloendoproteinase 4-MMP1.9e-1055.77Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG
        D+ SVAVHEIGH+LGLGHS  ++A M+P ++P + K  L  DDV G+++LYG
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG

Arabidopsis top hitse value%identityAlignment
AT1G24140.1 Matrixin family protein6.8e-1161.54Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG
        D+ SVAVHEIGHLLGLGHS  E +IM+P IR    K  L  DDV G++ LYG
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG

AT1G59970.1 Matrixin family protein8.9e-1161.54Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG
        D+ SVAVHEIGHLLGLGHS  E+AIM+P I     K  L +DD+ GI+ LYG
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG

AT1G70170.1 matrix metalloproteinase3.0e-1163.46Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG
        D+ SVAVHEIGHLLGLGHS  EE+IM+P I     K  L  DDV GI+ LYG
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG

AT2G45040.1 Matrixin family protein1.4e-1155.77Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG
        D+ SVAVHEIGH+LGLGHS  ++A M+P ++P + K  L  DDV G+++LYG
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG

AT4G16640.1 Matrixin family protein6.1e-1261.54Show/hide
Query:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG
        D+ SVA HEIGHLLGLGHS  E A+M+P +RP   K  L  DDVAG+  LYG
Subjt:  DVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVK-GLFQDDVAGIKALYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGACGGTGGGGGCTCGCCCAAATTGTCACGATGTGATGTCGGTGGCAGTGCATGAGATTGGGCATCTTCTTGGGCTCGGCCACAGCGGCGCCGAGGAAGCCATCATGTG
GCCATACATACGCCCCAACGCTGTCAAGGGCTTGTTTCAAGACGATGTTGCTGGAATCAAGGCTTTGTATGGATTGCCT
mRNA sequenceShow/hide mRNA sequence
TGGACGGTGGGGGCTCGCCCAAATTGTCACGATGTGATGTCGGTGGCAGTGCATGAGATTGGGCATCTTCTTGGGCTCGGCCACAGCGGCGCCGAGGAAGCCATCATGTG
GCCATACATACGCCCCAACGCTGTCAAGGGCTTGTTTCAAGACGATGTTGCTGGAATCAAGGCTTTGTATGGATTGCCT
Protein sequenceShow/hide protein sequence
WTVGARPNCHDVMSVAVHEIGHLLGLGHSGAEEAIMWPYIRPNAVKGLFQDDVAGIKALYGLP