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MS003251 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003251
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein 230
Genome locationscaffold234:1565246..1566696
RNA-Seq ExpressionMS003251
SyntenyMS003251
Gene Ontology termsGO:0005768 - endosome (cellular component)
GO:0005776 - autophagosome (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008590 - Transmembrane protein 230/134
IPR044234 - Transmembrane protein 230


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459349.1 PREDICTED: transmembrane protein 230 [Cucumis melo]1.5e-5087.07Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRN+RYSSL +DDND+D EGS++DPRF YTPK+FDK+PWKSIALAIFLLLLGSLLLFLSYFVL GHM GEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRG NGYRFA IPDY
Subjt:  AWRGVNGYRFAYIPDY

XP_022133456.1 transmembrane protein 230 [Momordica charantia]3.0e-59100Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRGVNGYRFAYIPDY
Subjt:  AWRGVNGYRFAYIPDY

XP_022961740.1 transmembrane protein 230-like [Cucurbita moschata]3.6e-5289.66Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSL  DDNDLDYEGSQYDPRF YTPK+FDK+PWKSIALA+FLLLLGS LLFLSYFVL GHM GEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRG NGYRFA IPDY
Subjt:  AWRGVNGYRFAYIPDY

XP_022990725.1 transmembrane protein 230-like [Cucurbita maxima]4.0e-5188.79Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRR+VRYSSL  DDNDLDYEGSQYDPRF YTPK+FDK+PWKSIALA+FLLLLGSLLLFLSYFVL GHM GEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRG NGY FA IPDY
Subjt:  AWRGVNGYRFAYIPDY

XP_023521905.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo]1.2e-5290.52Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSL  DDNDLDYEGSQYDPRF YTPK+FDK+PWKSIALA+FLLLLGSLLLFLSYFVL GHM GEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRG NGYRFA IPDY
Subjt:  AWRGVNGYRFAYIPDY

TrEMBL top hitse value%identityAlignment
A0A1S3C9X7 Transmembrane protein 2307.3e-5187.07Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRN+RYSSL +DDND+D EGS++DPRF YTPK+FDK+PWKSIALAIFLLLLGSLLLFLSYFVL GHM GEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRG NGYRFA IPDY
Subjt:  AWRGVNGYRFAYIPDY

A0A6J1BV57 Transmembrane protein 2301.5e-59100Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRGVNGYRFAYIPDY
Subjt:  AWRGVNGYRFAYIPDY

A0A6J1HAY7 Transmembrane protein 2301.7e-5289.66Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSL  DDNDLDYEGSQYDPRF YTPK+FDK+PWKSIALA+FLLLLGS LLFLSYFVL GHM GEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRG NGYRFA IPDY
Subjt:  AWRGVNGYRFAYIPDY

A0A6J1JQW3 Transmembrane protein 2301.9e-5188.79Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRR+VRYSSL  DDNDLDYEGSQYDPRF YTPK+FDK+PWKSIALA+FLLLLGSLLLFLSYFVL GHM GEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRG NGY FA IPDY
Subjt:  AWRGVNGYRFAYIPDY

A0A6J1K312 Transmembrane protein 2309.6e-5187.07Show/hide
Query:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSL TDDNDLD +G+Q+DPRF YTPK+FDK+PWKSIALAIFLL LGS LLFLSYFVL GHM GEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGVNGYRFAYIPDY
        AWRG NGYRFA IPDY
Subjt:  AWRGVNGYRFAYIPDY

SwissProt top hitse value%identityAlignment
Q5E975 Transmembrane protein 2303.4e-1340.18Show/hide
Query:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG
        V+YS L  TDD  +D +  +  P          K+P+K+IALA  L L+G+ L+ +   +L G++  G   +A  +L +G+L FLPGFY  RIAYYA +G
Subjt:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG

Query:  VNGYRFAYIPDY
          GY +  IPD+
Subjt:  VNGYRFAYIPDY

Q5R8X3 Transmembrane protein 2302.6e-1341.96Show/hide
Query:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG
        V+YS L  TDD  +D +       F  TP    K+P+K+IALA  L L+G+ L+ +   +L G++  G   +A  +L +G+L FLPGFY  RIAYYA +G
Subjt:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG

Query:  VNGYRFAYIPDY
          GY +  IPD+
Subjt:  VNGYRFAYIPDY

Q5ZLH4 Transmembrane protein 2301.5e-1339.29Show/hide
Query:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG
        V+YS L  TDD  +D +  +  P          K+P+K+IALA+ L ++G+ L+ +   +L G++  G   +A  +L +G+L FLPGFY  RIAYYA +G
Subjt:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG

Query:  VNGYRFAYIPDY
          GY +  IPD+
Subjt:  VNGYRFAYIPDY

Q8CIB6 Transmembrane protein 2303.4e-1340.18Show/hide
Query:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG
        V+YS L  TDD  +D +  +  P          K+P+K+IALA  L L+G+ L+ +   +L G++  G   +A  +L +G+L FLPGFY  RIAYYA +G
Subjt:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG

Query:  VNGYRFAYIPDY
          GY +  IPD+
Subjt:  VNGYRFAYIPDY

Q96A57 Transmembrane protein 2301.5e-1341.96Show/hide
Query:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG
        V+YS L  TDD  +D +       F  TP    K+P+K+IALA  L L+G+ L+ +   +L G++  G   +A  +L +G+L FLPGFY  RIAYYA +G
Subjt:  VRYSSL-PTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHM-PGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG

Query:  VNGYRFAYIPDY
          GY +  IPD+
Subjt:  VNGYRFAYIPDY

Arabidopsis top hitse value%identityAlignment
AT2G19350.1 Eukaryotic protein of unknown function (DUF872)5.1e-1241.67Show/hide
Query:  SYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGVNGYRFAYIP
        SYT    ++ P K I+LA+ LL+ G+L + L +F+    + G++      + LG L F+PGFY TRIAYYA++G  G+ F+ IP
Subjt:  SYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGVNGYRFAYIP

AT3G29170.1 Eukaryotic protein of unknown function (DUF872)1.0e-4166.12Show/hide
Query:  MASRRNVRYSSLPTDDNDLDY-----EGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYET
        MASRR+VRY+ LP D++D  Y     E   +DPRF Y+PK+FD+VPWKSIALA+FLL LG LLL LS+F+  GHM G+ SQ Y LL LG+LTFLPGFYET
Subjt:  MASRRNVRYSSLPTDDNDLDY-----EGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYET

Query:  RIAYYAWRGVNGYRFAYIPDY
        RIAYY+WRG  GYRFA IP Y
Subjt:  RIAYYAWRGVNGYRFAYIPDY

AT4G29850.1 Eukaryotic protein of unknown function (DUF872)8.7e-1241.67Show/hide
Query:  SYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGVNGYRFAYIP
        SYT    ++ P K IALA+ LL+ G+L +   +F+    + G++      + LG L F+PGFY TRIAYYA++G  G+ F+ IP
Subjt:  SYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGVNGYRFAYIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTAGGCGGAATGTTCGTTACAGCTCCCTTCCCACTGATGATAACGATCTTGATTATGAAGGAAGTCAGTATGACCCTCGCTTTTCCTATACACCAAAATCTTT
TGACAAGGTCCCCTGGAAATCCATCGCTCTTGCAATCTTCCTGTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTTGTATTAAGAGGTCACATGCCAGGAGAGA
AATCTCAAGCCTATGGTCTTCTAGCGTTGGGGGTTCTGACCTTCCTCCCAGGCTTTTACGAAACCAGGATTGCATATTATGCATGGAGGGGAGTTAATGGATATCGCTTT
GCTTACATCCCCGATTAC
mRNA sequenceShow/hide mRNA sequence
ATGGCATCTAGGCGGAATGTTCGTTACAGCTCCCTTCCCACTGATGATAACGATCTTGATTATGAAGGAAGTCAGTATGACCCTCGCTTTTCCTATACACCAAAATCTTT
TGACAAGGTCCCCTGGAAATCCATCGCTCTTGCAATCTTCCTGTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTTGTATTAAGAGGTCACATGCCAGGAGAGA
AATCTCAAGCCTATGGTCTTCTAGCGTTGGGGGTTCTGACCTTCCTCCCAGGCTTTTACGAAACCAGGATTGCATATTATGCATGGAGGGGAGTTAATGGATATCGCTTT
GCTTACATCCCCGATTAC
Protein sequenceShow/hide protein sequence
MASRRNVRYSSLPTDDNDLDYEGSQYDPRFSYTPKSFDKVPWKSIALAIFLLLLGSLLLFLSYFVLRGHMPGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGVNGYRF
AYIPDY