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MS003267 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003267
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription factor UPBEAT1-like
Genome locationscaffold234:1660913..1661263
RNA-Seq ExpressionMS003267
SyntenyMS003267
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039441.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]1.4e-1957.81Show/hide
Query:  MSSKTKILPNPLRNVRRR--------IKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTA---GEARKTEQLFKETADYIVLL
        MSSKT  LPNPLRN RRR         +RRF RR  A  G  P        S+L C  S+V+ KLEAL+SLIP Q+A   G+ R+ ++LFK+TADYIV+L
Subjt:  MSSKTKILPNPLRNVRRR--------IKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTA---GEARKTEQLFKETADYIVLL

Query:  KTQVVILQKLVDFFGSSCSDDAENAVVS
        KTQVVILQKLVDFFGS+CS D+ +AVVS
Subjt:  KTQVVILQKLVDFFGSSCSDDAENAVVS

KAG6578552.1 hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia]3.4e-1862.16Show/hide
Query:  MSSKTKILPNPLRNVRRRI---KRRFRRRP-CAFGGRNPVKYGETTSSS-LPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVI
        MS KT  L N     +R +   +RRF RR   A    NP + G+TTSSS       DV+AKLEAL+SLIPAQ+A E R+TEQLFKETADYIVLLKTQVVI
Subjt:  MSSKTKILPNPLRNVRRRI---KRRFRRRP-CAFGGRNPVKYGETTSSS-LPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVI

Query:  LQKLVDFFGSS
        LQKLVDFFGS+
Subjt:  LQKLVDFFGSS

KAG7016112.1 hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1863.06Show/hide
Query:  MSSKTKILPNPLRNVRRRI---KRRFRRRP-CAFGGRNPVKYGETTSSS-LPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVI
        MS KT  L N     +R +   +RRF RR   A    NP + GETTSSS       DV+AKLEAL+SLIPAQ+A E R+TEQLFKETADYIVLLKTQVVI
Subjt:  MSSKTKILPNPLRNVRRRI---KRRFRRRP-CAFGGRNPVKYGETTSSS-LPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVI

Query:  LQKLVDFFGSS
        LQKLVDFFGS+
Subjt:  LQKLVDFFGSS

XP_021605600.1 uncharacterized protein LOC110610041 [Manihot esculenta]2.8e-1245.76Show/hide
Query:  SSKTKILPNPLRNVRR----RIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQ
        +SK  +   P R++RR    R +R + RRPC      P +   TT++    +++ V+AKLE L++LIPA   GE  K E LF+ETADYIVLLKTQV +LQ
Subjt:  SSKTKILPNPLRNVRR----RIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQ

Query:  KLVDFFGSSCSDDAENAV
        +LV+F+GS+ ++   NAV
Subjt:  KLVDFFGSSCSDDAENAV

XP_022993697.1 uncharacterized protein LOC111489609 [Cucurbita maxima]4.8e-2069.61Show/hide
Query:  LRNVRRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSS-------DVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFG
        L N+R R KR       A    NP +YGETTSSS PCSSS       DV+AKLEAL+SLIPAQ+A EAR+TEQLFKETADYIVLLKTQVVILQKLVDFFG
Subjt:  LRNVRRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSS-------DVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFG

Query:  SS
        S+
Subjt:  SS

TrEMBL top hitse value%identityAlignment
A0A2C9WB72 Uncharacterized protein1.4e-1245.76Show/hide
Query:  SSKTKILPNPLRNVRR----RIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQ
        +SK  +   P R++RR    R +R + RRPC      P +   TT++    +++ V+AKLE L++LIPA   GE  K E LF+ETADYIVLLKTQV +LQ
Subjt:  SSKTKILPNPLRNVRR----RIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQ

Query:  KLVDFFGSSCSDDAENAV
        +LV+F+GS+ ++   NAV
Subjt:  KLVDFFGSSCSDDAENAV

A0A2P5AW87 Transcription factor UPBEAT-like protein5.7e-1149.57Show/hide
Query:  MSSKTKILPNPLRNVRRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLV
        MSS TK     +R  RRR  R+ R R C    R     G  T       SS V+ KLEAL+ LIP    GE  KT+QLF++TADYIVLL+TQVV+LQKL+
Subjt:  MSSKTKILPNPLRNVRRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLV

Query:  DFFGSSCSDDAENAV
        +F+GS+   D+E+AV
Subjt:  DFFGSSCSDDAENAV

A0A5D3BNP5 Transcription factor UPBEAT1-like6.7e-2057.81Show/hide
Query:  MSSKTKILPNPLRNVRRR--------IKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTA---GEARKTEQLFKETADYIVLL
        MSSKT  LPNPLRN RRR         +RRF RR  A  G  P        S+L C  S+V+ KLEAL+SLIP Q+A   G+ R+ ++LFK+TADYIV+L
Subjt:  MSSKTKILPNPLRNVRRR--------IKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTA---GEARKTEQLFKETADYIVLL

Query:  KTQVVILQKLVDFFGSSCSDDAENAVVS
        KTQVVILQKLVDFFGS+CS D+ +AVVS
Subjt:  KTQVVILQKLVDFFGSSCSDDAENAVVS

A0A6J1JTK8 uncharacterized protein LOC1114896092.3e-2069.61Show/hide
Query:  LRNVRRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSS-------DVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFG
        L N+R R KR       A    NP +YGETTSSS PCSSS       DV+AKLEAL+SLIPAQ+A EAR+TEQLFKETADYIVLLKTQVVILQKLVDFFG
Subjt:  LRNVRRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSS-------DVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFG

Query:  SS
        S+
Subjt:  SS

B9SJE1 Uncharacterized protein2.6e-1150.98Show/hide
Query:  RRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSD-DAENA
        RRR     RRR C           +    S  CSSS V+ KLEAL++LIPA   GE  K +QLF+ETADYIVLL+TQV +LQ+L+ F+GSS ++ D ENA
Subjt:  RRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSD-DAENA

Query:  VV
        V+
Subjt:  VV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29370.1 unknown protein1.0e-0746.88Show/hide
Query:  VAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAENAVV
        V  KL AL+SL+P        +TE+LF+ETA+YIV L+TQVV+L+KL++ + +S SD  ++ V+
Subjt:  VAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAENAVV

AT5G39240.1 unknown protein5.9e-0838.61Show/hide
Query:  GGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIP--------------AQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAENAVV
        G R   K+G   +S         + KL+AL+SL+P               +      +TEQLF+ETADYIV L+ QVV+LQKL++ +GS  SD  E+  V
Subjt:  GGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIP--------------AQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDDAENAVV

Query:  S
        S
Subjt:  S


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCAAAACGAAGATTCTCCCAAATCCTCTCAGAAATGTCAGAAGAAGAATCAAAAGGAGGTTTCGCCGCCGTCCCTGCGCTTTCGGAGGCCGGAATCCCGTCAA
ATATGGCGAAACAACGTCGTCGTCGCTGCCGTGCTCCTCCTCCGACGTGGCGGCTAAATTGGAGGCTCTGGAGAGCCTCATTCCGGCGCAAACTGCCGGCGAAGCCCGCA
AAACGGAGCAGTTGTTCAAGGAAACTGCGGATTACATTGTTCTATTGAAAACCCAGGTCGTGATTTTGCAGAAGCTGGTCGATTTTTTTGGATCCAGCTGCAGTGACGAC
GCAGAAAACGCCGTCGTTTCA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCCAAAACGAAGATTCTCCCAAATCCTCTCAGAAATGTCAGAAGAAGAATCAAAAGGAGGTTTCGCCGCCGTCCCTGCGCTTTCGGAGGCCGGAATCCCGTCAA
ATATGGCGAAACAACGTCGTCGTCGCTGCCGTGCTCCTCCTCCGACGTGGCGGCTAAATTGGAGGCTCTGGAGAGCCTCATTCCGGCGCAAACTGCCGGCGAAGCCCGCA
AAACGGAGCAGTTGTTCAAGGAAACTGCGGATTACATTGTTCTATTGAAAACCCAGGTCGTGATTTTGCAGAAGCTGGTCGATTTTTTTGGATCCAGCTGCAGTGACGAC
GCAGAAAACGCCGTCGTTTCA
Protein sequenceShow/hide protein sequence
MSSKTKILPNPLRNVRRRIKRRFRRRPCAFGGRNPVKYGETTSSSLPCSSSDVAAKLEALESLIPAQTAGEARKTEQLFKETADYIVLLKTQVVILQKLVDFFGSSCSDD
AENAVVS