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MS003280 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003280
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold234:1742232..1742573
RNA-Seq ExpressionMS003280
SyntenyMS003280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039429.1 hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa]1.2e-0737.61Show/hide
Query:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC
        + VV  M +  LSSS+ CR S+LMKANA+YG        G+S     E ++   + RFL    +KP T  T  PN+  C +G GN  G C G+ N+++ C
Subjt:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC

Query:  PKYTGSATC
         +Y  +  C
Subjt:  PKYTGSATC

KAA0039430.1 hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa]1.7e-0633.33Show/hide
Query:  VAVVAAMMVVFLSSSHCRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDCP
        + VV  ++ +F SS  CR S+L+KANA+Y              +  E ++   + R+L F     KT +T + NV  C +GAGN+   C+G  ++KK C 
Subjt:  VAVVAAMMVVFLSSSHCRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDCP

Query:  KYTGSATC
         Y G   C
Subjt:  KYTGSATC

KAG6578548.1 hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1041.96Show/hide
Query:  FPAVAVVAAMMVVFL-SSSHCRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSK
        F  VAV A M+ + L SS+  RAS L +ANA+YG             V  E +V   +ARFL+F++ K  TD+T+NP V++C +G GN  G C+G P +K
Subjt:  FPAVAVVAAMMVVFL-SSSHCRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSK

Query:  KDCPKYTGSATC
        K C  Y G++ C
Subjt:  KDCPKYTGSATC

KGN52518.1 hypothetical protein Csa_007870 [Cucumis sativus]5.9e-0735.78Show/hide
Query:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC
        + VV  M++  L SSH CRAS+L+KANA+YG             + AE ++   V R+L ++    KT +TK+  V  C +G GN+   C G  ++KK C
Subjt:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC

Query:  PKYTGSATC
          Y     C
Subjt:  PKYTGSATC

KGN52519.1 hypothetical protein Csa_008872 [Cucumis sativus]7.7e-0735.78Show/hide
Query:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC
        + VV  M +  LSSS+ CR SILMKANA+ G             +  E ++   + R+L F+     T  T +PN+ TC +GAGN    C G+ N+ + C
Subjt:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC

Query:  PKYTGSATC
          Y G   C
Subjt:  PKYTGSATC

TrEMBL top hitse value%identityAlignment
A0A0A0KSJ4 Uncharacterized protein2.9e-0735.78Show/hide
Query:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC
        + VV  M++  L SSH CRAS+L+KANA+YG             + AE ++   V R+L ++    KT +TK+  V  C +G GN+   C G  ++KK C
Subjt:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC

Query:  PKYTGSATC
          Y     C
Subjt:  PKYTGSATC

A0A0A0KUG7 Uncharacterized protein3.7e-0735.78Show/hide
Query:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC
        + VV  M +  LSSS+ CR SILMKANA+ G             +  E ++   + R+L F+     T  T +PN+ TC +GAGN    C G+ N+ + C
Subjt:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC

Query:  PKYTGSATC
          Y G   C
Subjt:  PKYTGSATC

A0A0A0KVT8 Uncharacterized protein4.6e-0534.58Show/hide
Query:  VVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDCPK
        VV  M++  L SSH CR S+L+KANA+Y              +  E M+   + R L    +K KT +T   NV  C +GAGN    C G  +++  C  
Subjt:  VVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDCPK

Query:  YTGSATC
        Y G   C
Subjt:  YTGSATC

A0A5D3BNE4 Uncharacterized protein5.8e-0837.61Show/hide
Query:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC
        + VV  M +  LSSS+ CR S+LMKANA+YG        G+S     E ++   + RFL    +KP T  T  PN+  C +G GN  G C G+ N+++ C
Subjt:  VAVVAAMMVVFLSSSH-CRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDC

Query:  PKYTGSATC
         +Y  +  C
Subjt:  PKYTGSATC

A0A5D3BR80 Uncharacterized protein8.3e-0733.33Show/hide
Query:  VAVVAAMMVVFLSSSHCRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDCP
        + VV  ++ +F SS  CR S+L+KANA+Y              +  E ++   + R+L F     KT +T + NV  C +GAGN+   C+G  ++KK C 
Subjt:  VAVVAAMMVVFLSSSHCRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDCP

Query:  KYTGSATC
         Y G   C
Subjt:  KYTGSATC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTCGTGTTTTTCCGGCAGTGGCAGTAGTGGCGGCGATGATGGTGGTGTTCCTCTCTTCCAGCCATTGCAGGGCTTCGATTCTGATGAAGGCCAACGCCAGCTACGGCTG
CGGCGGCGGCGGAGAATGTTTGGGAATCTCGGAGGCGGTGGCGGCGGAGTTCATGGTGGGAAGCCACGTGGCGCGGTTTCTGGATTTTGAAGATAACAAACCGAAAACGG
ACGAGACGAAAAATCCTAATGTGCAGACGTGTCAGAGCGGCGCCGGAAACGCTGGAGGCGCCTGCAACGGCGACCCCAACAGTAAAAAGGACTGCCCCAAGTACACCGGC
TCCGCCACCTGC
mRNA sequenceShow/hide mRNA sequence
GGTCGTGTTTTTCCGGCAGTGGCAGTAGTGGCGGCGATGATGGTGGTGTTCCTCTCTTCCAGCCATTGCAGGGCTTCGATTCTGATGAAGGCCAACGCCAGCTACGGCTG
CGGCGGCGGCGGAGAATGTTTGGGAATCTCGGAGGCGGTGGCGGCGGAGTTCATGGTGGGAAGCCACGTGGCGCGGTTTCTGGATTTTGAAGATAACAAACCGAAAACGG
ACGAGACGAAAAATCCTAATGTGCAGACGTGTCAGAGCGGCGCCGGAAACGCTGGAGGCGCCTGCAACGGCGACCCCAACAGTAAAAAGGACTGCCCCAAGTACACCGGC
TCCGCCACCTGC
Protein sequenceShow/hide protein sequence
GRVFPAVAVVAAMMVVFLSSSHCRASILMKANASYGCGGGGECLGISEAVAAEFMVGSHVARFLDFEDNKPKTDETKNPNVQTCQSGAGNAGGACNGDPNSKKDCPKYTG
SATC