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MS003357 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003357
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S26
Genome locationscaffold234:2334702..2335432
RNA-Seq ExpressionMS003357
SyntenyMS003357
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000892 - Ribosomal protein S26e
IPR038551 - Ribosomal protein S26e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7016042.1 40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-52100Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

KYP69480.1 40S ribosomal protein S26-1, partial [Cajanus cajan]5.6e-5298.1Show/hide
Query:  QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
Subjt:  QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRR
        FIRRR
Subjt:  FIRRR

RZB57216.1 40S ribosomal protein S26-1 [Glycine soja]5.6e-5298.1Show/hide
Query:  QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
Subjt:  QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRR
        FIRRR
Subjt:  FIRRR

XP_022134511.1 40S ribosomal protein S26-1-like [Momordica charantia]2.5e-52100Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

XP_022939944.1 40S ribosomal protein S26-3-like [Cucurbita moschata]2.5e-52100Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

TrEMBL top hitse value%identityAlignment
A0A151TR17 40S ribosomal protein S26 (Fragment)2.7e-5298.1Show/hide
Query:  QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
Subjt:  QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRR
        FIRRR
Subjt:  FIRRR

A0A151TR30 40S ribosomal protein S26 (Fragment)2.7e-5298.1Show/hide
Query:  QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
        QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR
Subjt:  QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQR

Query:  FIRRR
        FIRRR
Subjt:  FIRRR

A0A6J1BXZ8 40S ribosomal protein S261.2e-52100Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

A0A6J1FIL8 40S ribosomal protein S261.2e-52100Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

A0A6J1K0V7 40S ribosomal protein S261.2e-52100Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
        IRRR
Subjt:  IRRR

SwissProt top hitse value%identityAlignment
O45499 40S ribosomal protein S263.4e-3670.87Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR R+PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRR
         +R
Subjt:  IRR

P49206 40S ribosomal protein S26-11.8e-4585.58Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

P49216 40S ribosomal protein S266.8e-4582.52Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRR
         RR
Subjt:  IRR

Q8LPJ7 40S ribosomal protein S26-21.8e-4585.58Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

Q9LYK9 40S ribosomal protein S26-34.7e-4686.54Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

Arabidopsis top hitse value%identityAlignment
AT2G40510.1 Ribosomal protein S26e family protein1.3e-4685.58Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

AT2G40590.1 Ribosomal protein S26e family protein1.3e-4685.58Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR

AT3G56340.1 Ribosomal protein S26e family protein3.4e-4786.54Show/hide
Query:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF
        TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF
Subjt:  TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRF

Query:  IRRR
         RR+
Subjt:  IRRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATCAA
GAGGTTCCTTGTCAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCAGTACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACT
GCGTTTCCTGTGCCATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG
mRNA sequenceShow/hide mRNA sequence
CAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATCAA
GAGGTTCCTTGTCAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCAGTACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACT
GCGTTTCCTGTGCCATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG
Protein sequenceShow/hide protein sequence
QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR