CuGenDBv2

Gene ID	MS003413
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit beta, chloroplastic
Genome location	scaffold234:2732437..2732610
RNA-Seq Expression	MS003413
Synteny	MS003413
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function)
InterPro domains	IPR020003 - ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR024034 - ATPase, F1/V1 complex, beta/alpha subunit, C-terminal IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

AAY19339.1 ATP synthase beta subunit, partial [Anisophyllea fallax]

1.3e-21

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

AAY42227.1 ATP synthase beta subunit, partial [Anisophyllea myriosticta]

1.3e-21

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

BAF40477.1 ATP synthase beta subunit, partial [Pimelodendron griffithianum]

2.8e-21

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

BAG66982.1 ATP synthase beta subunit, partial [Rinorea subintegrifolia]

4.3e-22

98.28

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

YP_010132534.1 ATP synthase CF1 beta subunit [Vicia cracca]

1.3e-21

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

TrEMBL top hits

e value

%identity

Alignment

A0A7T5BXX5 ATP synthase CF1 beta subunit

6.1e-22

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

A0ZQ72 ATP synthase subunit beta (Fragment)

1.4e-21

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

A3KLS4 ATP synthase subunit beta (Fragment)

6.1e-22

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

B3XY66 ATP synthase subunit beta (Fragment)

2.1e-22

98.28

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

Q29VA2 ATP synthase subunit beta (Fragment)

6.1e-22

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHYGTAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

SwissProt top hits

e value

%identity

Alignment

A4GYR7 ATP synthase subunit beta, chloroplastic

4.8e-24

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

B1NWF7 ATP synthase subunit beta, chloroplastic

4.8e-24

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

Q14FF0 ATP synthase subunit beta, chloroplastic

4.8e-24

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

Q3V527 ATP synthase subunit beta, chloroplastic

1.4e-23

94.83

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHY TAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

Q95FL8 ATP synthase subunit beta, chloroplastic

4.8e-24

96.55

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQPQIVGEEHY TAQRVKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G08670.1 ATP synthase alpha/beta family protein

2.2e-16

68.97

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS  ++  GIYPAVDPLDSTS ML P I+GEEHY TA+ V++ LQ YK LQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

AT5G08680.1 ATP synthase alpha/beta family protein

2.2e-16

68.97

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS  ++  GIYPAVDPLDSTS ML P I+GEEHY TA+ V++ LQ YK LQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

AT5G08690.1 ATP synthase alpha/beta family protein

2.2e-16

68.97

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS  ++  GIYPAVDPLDSTS ML P I+GEEHY TA+ V++ LQ YK LQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

ATCG00480.1 ATP synthase subunit beta

2.9e-24

93.1

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Query:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ
        HLDATTVLS GLAAKGIYPAVDPLDSTSTMLQP+IVGEEHY TAQ+VKQTLQRYKELQ
Subjt:  HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

Sequences

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CDS sequence

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CATTTGGATGCTACTACCGTACTATCAACAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCAAATCGTTGG
TGAAGAACATTATGGAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAG

mRNA sequence

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CATTTGGATGCTACTACCGTACTATCAACAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCAAATCGTTGG
TGAAGAACATTATGGAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAG

Protein sequence

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HLDATTVLSTGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYGTAQRVKQTLQRYKELQ

MS003413 (gene) of Bitter gourd (TR) v1 genome