; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003422 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003422
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-CH-type domain-containing protein
Genome locationscaffold234:2772086..2774203
RNA-Seq ExpressionMS003422
SyntenyMS003422
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011016 - Zinc finger, RING-CH-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602635.1 hypothetical protein SDJN03_07868, partial [Cucurbita argyrosperma subsp. sororia]1.7e-8678.34Show/hide
Query:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR----RR----------GAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSS
        M+TI+++HV+A+EEE EE   R STAG   SP     RR          GA    EKRRGSSVSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++
Subjt:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR----RR----------GAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSS

Query:  NHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLAC
        NHESGIPIELGCSCKDDLAAAHKHCAEAWFK+KGDITCEICGSIAHNVT T EADSTEQ N+S D TTAT  AAVVVPPHSTE+RNFWQGHRFLNFLLAC
Subjt:  NHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLAC

Query:  MVFAFVISWLFHFKIPS
        MVFAFVISWLFHFKIPS
Subjt:  MVFAFVISWLFHFKIPS

XP_022133648.1 uncharacterized protein LOC111006186 [Momordica charantia]1.1e-10799.01Show/hide
Query:  MTTIDNSHVIAVEEEEEGTRRASTAGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCK
        MTTIDNSHVIAVEEEEEG RRAST GADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCK
Subjt:  MTTIDNSHVIAVEEEEEGTRRASTAGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCK

Query:  DDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKI
        DDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKI
Subjt:  DDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKI

Query:  PS
        PS
Subjt:  PS

XP_022938531.1 uncharacterized protein LOC111444740 [Cucurbita moschata]5.1e-8679.53Show/hide
Query:  MTTIDNSHVIAVE-EEEEGTRRASTAGADV------------SPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH
        MTT  NSHV+A+E  E E  RR S AGAD               R       AEKRR SSVSECSVEMDLECGLAEIK+HL K+ERDCRICHLSLD+SN 
Subjt:  MTTIDNSHVIAVE-EEEEGTRRASTAGADV------------SPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH

Query:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV
        ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVT+T E DSTEQRNDS DATTATAAAAVVVPPHSTE+RNFWQGHRFLNFLLACMV
Subjt:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV

Query:  FAFVISWLFHFKIPS
        FAFVISWLFHFKIPS
Subjt:  FAFVISWLFHFKIPS

XP_022957596.1 uncharacterized protein LOC111458938 [Cucurbita moschata]6.0e-8779.17Show/hide
Query:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI----EAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSN
        M+TI+++HV+A+EEE EE   R STAG   SP          +  AEI      EKRRGSSVSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++N
Subjt:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI----EAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSN

Query:  HESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACM
        HESGIPIELGCSCKDDLAAAHKHCAEAWFK+KGDITCEICGSIAHNVTST EADSTEQ N+S D TTAT AAAVVVPPHSTE+RNFWQGHRFLNFLLACM
Subjt:  HESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACM

Query:  VFAFVISWLFHFKIPS
        VFAFVISWLFHFKIPS
Subjt:  VFAFVISWLFHFKIPS

XP_022990745.1 uncharacterized protein LOC111487535 [Cucurbita maxima]2.4e-8880.47Show/hide
Query:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI---EAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH
        M+TI N+HV+A+EEE EE   R STAG D SP          +  AEI     EKRRGSSVSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++NH
Subjt:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI---EAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH

Query:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV
        ESGIPIELGCSCKDDLAAAHKHCAEAWFK+KGDITCEICGSIAHNVTST EADSTEQ N+S D TTAT AAAVVVPPHSTE+RNFWQGHRFLNFLLACMV
Subjt:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV

Query:  FAFVISWLFHFKIPS
        FAFVISWLFHFKIPS
Subjt:  FAFVISWLFHFKIPS

TrEMBL top hitse value%identityAlignment
A0A1S3B429 uncharacterized protein LOC1034855461.0e-8477.67Show/hide
Query:  MTTIDNSHVIAVEEEE---------EGTRRAST-AGADVSPRRRGA---EIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH
        MTT+  SHV+A+E E+         +  RR S  + AD+      A      AEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLD+SNH
Subjt:  MTTIDNSHVIAVEEEE---------EGTRRAST-AGADVSPRRRGA---EIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH

Query:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV
        ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVT T EADSTEQRN+  +ATTATA AA+V+PPHSTE+RNFWQGHRFLNFLLACMV
Subjt:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV

Query:  FAFVISWLFHFKIPS
        FAFVISWLFHFKIPS
Subjt:  FAFVISWLFHFKIPS

A0A6J1BZQ7 uncharacterized protein LOC1110061865.1e-10899.01Show/hide
Query:  MTTIDNSHVIAVEEEEEGTRRASTAGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCK
        MTTIDNSHVIAVEEEEEG RRAST GADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCK
Subjt:  MTTIDNSHVIAVEEEEEGTRRASTAGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCK

Query:  DDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKI
        DDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKI
Subjt:  DDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKI

Query:  PS
        PS
Subjt:  PS

A0A6J1FEB0 uncharacterized protein LOC1114447402.5e-8679.53Show/hide
Query:  MTTIDNSHVIAVE-EEEEGTRRASTAGADV------------SPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH
        MTT  NSHV+A+E  E E  RR S AGAD               R       AEKRR SSVSECSVEMDLECGLAEIK+HL K+ERDCRICHLSLD+SN 
Subjt:  MTTIDNSHVIAVE-EEEEGTRRASTAGADV------------SPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH

Query:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV
        ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVT+T E DSTEQRNDS DATTATAAAAVVVPPHSTE+RNFWQGHRFLNFLLACMV
Subjt:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV

Query:  FAFVISWLFHFKIPS
        FAFVISWLFHFKIPS
Subjt:  FAFVISWLFHFKIPS

A0A6J1GZN3 uncharacterized protein LOC1114589382.9e-8779.17Show/hide
Query:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI----EAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSN
        M+TI+++HV+A+EEE EE   R STAG   SP          +  AEI      EKRRGSSVSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++N
Subjt:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI----EAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSN

Query:  HESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACM
        HESGIPIELGCSCKDDLAAAHKHCAEAWFK+KGDITCEICGSIAHNVTST EADSTEQ N+S D TTAT AAAVVVPPHSTE+RNFWQGHRFLNFLLACM
Subjt:  HESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACM

Query:  VFAFVISWLFHFKIPS
        VFAFVISWLFHFKIPS
Subjt:  VFAFVISWLFHFKIPS

A0A6J1JQX9 uncharacterized protein LOC1114875351.2e-8880.47Show/hide
Query:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI---EAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH
        M+TI N+HV+A+EEE EE   R STAG D SP          +  AEI     EKRRGSSVSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++NH
Subjt:  MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI---EAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNH

Query:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV
        ESGIPIELGCSCKDDLAAAHKHCAEAWFK+KGDITCEICGSIAHNVTST EADSTEQ N+S D TTAT AAAVVVPPHSTE+RNFWQGHRFLNFLLACMV
Subjt:  ESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMV

Query:  FAFVISWLFHFKIPS
        FAFVISWLFHFKIPS
Subjt:  FAFVISWLFHFKIPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G37950.1 RING/FYVE/PHD zinc finger superfamily protein3.2e-3051.47Show/hide
Query:  ERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQE-----ADSTEQRNDSTDATTATAAAAVVVPPHS
        E+DCRICHL +++S    G  IELGCSCKDDLA AH+ CAE WFKIKGD TCEIC S+A NV    E      +  E RN    A      A VV     
Subjt:  ERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQE-----ADSTEQRNDSTDATTATAAAAVVVPPHS

Query:  TESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
            N WQ  R +N +LACMVF F ISW+FHF + S
Subjt:  TESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

AT5G01070.1 RING/FYVE/PHD zinc finger superfamily protein2.0e-1669.39Show/hide
Query:  ERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD
        E+DCRICHL L+SS HE G P+ LGCSCKDDL   HK CA+ WFKIKG+
Subjt:  ERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD

AT5G01070.2 RING/FYVE/PHD zinc finger superfamily protein4.1e-3353.44Show/hide
Query:  ERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRN
        E+DCRICHL L+SS HE G P+ LGCSCKDDL   HK CA+ WFKIKG+ TCEIC SIA N               + D   A     +V    S + R 
Subjt:  ERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRN

Query:  FWQGHRFLNFLLACMVFAFVISWLFHFKIPS
          +G+RFLNFLL CMV AFVISW FHF +PS
Subjt:  FWQGHRFLNFLLACMVFAFVISWLFHFKIPS

AT5G05830.1 RING/FYVE/PHD zinc finger superfamily protein9.0e-5759.36Show/hide
Query:  ASTAGADVSPRRRGAEIEAE------KRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWF
        +S    D  PRR    +E E      + R S+ S CSVE+DLE GL E  VHL++ ERDCRICH+SLD++N ESG+PIELGCSCK DLAAAHKHCAE WF
Subjt:  ASTAGADVSPRRRGAEIEAE------KRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWF

Query:  KIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        KIKG+  CE+CGSIA NV  + E +S E RN++      T   +    P   E R+FWQGHRFLNFLLACMVFAFVISWLFHF +PS
Subjt:  KIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

AT5G59000.1 RING/FYVE/PHD zinc finger superfamily protein4.7e-2945.91Show/hide
Query:  RDCRICHLSL---------------DSSNHES----------------GIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADS
        RDCRICHL L               DS + E                 G+P++LGCSCK DL  AH  CAE WFKIKG++TCEICG++A NV        
Subjt:  RDCRICHLSL---------------DSSNHES----------------GIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADS

Query:  TEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKI
         EQ N  + A+T + AAA       TE R  W G   +NFLLA MVFAFV+SWLFHFK+
Subjt:  TEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACAATAGACAACTCCCACGTCATCGCTGTGGAAGAAGAGGAAGAGGGGACTCGCCGGGCTTCCACCGCCGGCGCTGACGTCTCACCGCGGCGGCGCGGGGCTGA
GATTGAGGCCGAGAAAAGAAGGGGATCCTCTGTTTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCCAAAATCGAGAGGG
ATTGCCGGATTTGCCATCTGAGTTTGGATTCTTCCAATCACGAATCTGGAATCCCTATCGAGCTGGGTTGTTCCTGTAAGGACGATTTGGCTGCTGCCCATAAGCACTGT
GCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTCAAGAAGCCGATTCAACAGAGCAGCGGAATGA
CTCAACTGATGCAACGACAGCGACTGCTGCAGCTGCTGTTGTGGTACCACCGCACTCTACAGAATCTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAACTTCTTACTCG
CCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCA
mRNA sequenceShow/hide mRNA sequence
ATGACGACAATAGACAACTCCCACGTCATCGCTGTGGAAGAAGAGGAAGAGGGGACTCGCCGGGCTTCCACCGCCGGCGCTGACGTCTCACCGCGGCGGCGCGGGGCTGA
GATTGAGGCCGAGAAAAGAAGGGGATCCTCTGTTTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCCAAAATCGAGAGGG
ATTGCCGGATTTGCCATCTGAGTTTGGATTCTTCCAATCACGAATCTGGAATCCCTATCGAGCTGGGTTGTTCCTGTAAGGACGATTTGGCTGCTGCCCATAAGCACTGT
GCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTCAAGAAGCCGATTCAACAGAGCAGCGGAATGA
CTCAACTGATGCAACGACAGCGACTGCTGCAGCTGCTGTTGTGGTACCACCGCACTCTACAGAATCTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAACTTCTTACTCG
CCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCA
Protein sequenceShow/hide protein sequence
MTTIDNSHVIAVEEEEEGTRRASTAGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHC
AEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS