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MS003445 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003445
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
Genome locationscaffold234:2875207..2875488
RNA-Seq ExpressionMS003445
SyntenyMS003445
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0008168 - methyltransferase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3433650.1 hypothetical protein FNV43_RR24753 [Rhamnella rubrinervis]4.5e-2176.19Show/hide
Query:  SFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPSLLN
        SFFQMPLHYPRY++KDY+DMPEWKLDRLLADYGL   GDL +KR FAMGAFLWP FH  + L+
Subjt:  SFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPSLLN

KAG6578420.1 hypothetical protein SDJN03_22868, partial [Cucurbita argyrosperma subsp. sororia]9.8e-2467.47Show/hide
Query:  MEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFH-----HPSLLNKKLI
        ME  EK +   +FFQMPLHYPRYSK DYE+MPEWKLDRLL +YGLPT G+LP+KR+FAMGAFLW ++H      PSLLN KL+
Subjt:  MEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFH-----HPSLLNKKLI

OVA17787.1 hypothetical protein BVC80_1835g174 [Macleaya cordata]5.9e-2168.57Show/hide
Query:  MEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHP
        ME ++K  +  S+FQMPLHYPRYS+KDYEDMPEWKLDRLL +YGLP  GDL +KR +AMGAFLWP+   P
Subjt:  MEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHP

XP_010108400.1 uncharacterized protein LOC21393700 [Morus notabilis]4.5e-2170.59Show/hide
Query:  QEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPS
        ++K E   S+FQMPLHYPRY+K+DY+DMPEWKLD+LLA YGLPT GDL +KR FA+GAFLWP+FH  S
Subjt:  QEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPS

XP_040869322.1 uncharacterized protein LOC121174311, partial [Glycine max]6.3e-2375.76Show/hide
Query:  FFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPSLLNKKLI
        FFQMPLHYPRY++KDY+DMPEWKLDRLL +YGLPT GDL +KR FAMGAFLWP   H  L NKK+I
Subjt:  FFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPSLLNKKLI

TrEMBL top hitse value%identityAlignment
A0A061FTQ6 Cytoplasmic tRNA 2-thiolation protein 12.9e-2173.13Show/hide
Query:  EKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFH
        EKQ  +    SFFQMPLHYPRY++KDY+DMPEWKLDRLLA+YGL   GDL +KR+FAMGAFLWP+FH
Subjt:  EKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFH

A0A1R3I234 Uncharacterized protein4.9e-2180.7Show/hide
Query:  SFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFH
        SFFQMPLHYPRY+KKDY++M EWK+DRLLADYGL T GDL +KR+FAMGAFLWP+FH
Subjt:  SFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFH

A0A200R4Z5 Uncharacterized protein2.9e-2168.57Show/hide
Query:  MEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHP
        ME ++K  +  S+FQMPLHYPRYS+KDYEDMPEWKLDRLL +YGLP  GDL +KR +AMGAFLWP+   P
Subjt:  MEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHP

A0A2P5ALC9 Uncharacterized protein4.9e-2172.46Show/hide
Query:  SFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPE---FHHPSLLNKKL
        S+FQMPLHYPRY+KKDY+DMPEWKLDRLLA+YGL T GDL +KR FA+GAFLWP+   F   SLL+KK+
Subjt:  SFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPE---FHHPSLLNKKL

W9SNS4 Uncharacterized protein2.2e-2170.59Show/hide
Query:  QEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPS
        ++K E   S+FQMPLHYPRY+K+DY+DMPEWKLD+LLA YGLPT GDL +KR FA+GAFLWP+FH  S
Subjt:  QEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09950.1 unknown protein1.0e-1545.98Show/hide
Query:  LLYINIQEYNQQRTNMEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGD--LPFKRRFAMGAFLWPEFHHP
        L ++N  +  +   N++K   ++   S F+MPLHYPRY+K+DYE+M EW+LD LL++YGL    D  L  KR FA+  F+WP  HHP
Subjt:  LLYINIQEYNQQRTNMEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGD--LPFKRRFAMGAFLWPEFHHP

AT3G11405.1 unknown protein1.1e-1261.82Show/hide
Query:  PSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTS-GDLPFKRRFAMGAFLW
        PS FQMPL YP Y+K+ Y+ M E +LDRLL  YGLPT  G+L  K+ FA+GAFLW
Subjt:  PSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTS-GDLPFKRRFAMGAFLW

AT3G55570.1 unknown protein2.0e-2268.66Show/hide
Query:  SFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPSLLNKKLI
        S F+MPLHYPRYSK+DY+DMPEWKLDR+LADYGL T GDL  KR FA+GAFLW    +P L  +K I
Subjt:  SFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPSLLNKKLI

AT5G41761.1 unknown protein5.0e-1863.33Show/hide
Query:  EKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLW
        +K + + S FQ+PLHYP+Y+K DYE MPEW+LDRLL +YGLP  GD   KR+FA+GAFLW
Subjt:  EKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLW

AT5G55620.1 unknown protein1.7e-1352.17Show/hide
Query:  RTNMEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPE
        R  + K  K E  PS FQ+PLHYP+YSK DYE M + +LD LL  YG    G L  KR FA+ +FLWP+
Subjt:  RTNMEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACATTATTATATATCAACATTCAAGAATATAATCAACAAAGAACAAACATGGAGAAGCAAGAGAAGATCGAGATGAAACCAAGCTTCTTTCAAATGCCCCTTCACTATCC
TAGATACTCGAAGAAGGACTACGAGGACATGCCTGAATGGAAGCTCGACCGCCTCCTCGCCGACTACGGCCTCCCGACCTCGGGTGACTTGCCCTTCAAACGCCGCTTCG
CCATGGGTGCATTCCTCTGGCCTGAGTTCCACCATCCCTCTCTTCTCAACAAAAAACTCATC
mRNA sequenceShow/hide mRNA sequence
ACATTATTATATATCAACATTCAAGAATATAATCAACAAAGAACAAACATGGAGAAGCAAGAGAAGATCGAGATGAAACCAAGCTTCTTTCAAATGCCCCTTCACTATCC
TAGATACTCGAAGAAGGACTACGAGGACATGCCTGAATGGAAGCTCGACCGCCTCCTCGCCGACTACGGCCTCCCGACCTCGGGTGACTTGCCCTTCAAACGCCGCTTCG
CCATGGGTGCATTCCTCTGGCCTGAGTTCCACCATCCCTCTCTTCTCAACAAAAAACTCATC
Protein sequenceShow/hide protein sequence
TLLYINIQEYNQQRTNMEKQEKIEMKPSFFQMPLHYPRYSKKDYEDMPEWKLDRLLADYGLPTSGDLPFKRRFAMGAFLWPEFHHPSLLNKKLI