; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003470 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003470
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionActin-related protein 2/3 complex subunit 5
Genome locationscaffold234:3006368..3008412
RNA-Seq ExpressionMS003470
SyntenyMS003470
Gene Ontology termsGO:0030833 - regulation of actin filament polymerization (biological process)
GO:0034314 - Arp2/3 complex-mediated actin nucleation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005885 - Arp2/3 protein complex (cellular component)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR006789 - Actin-related protein 2/3 complex subunit 5
IPR036743 - Actin-related protein 2/3 complex subunit 5 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441367.1 PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo]1.0e-6696.3Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA   EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

XP_010089302.1 actin-related protein 2/3 complex subunit 5A [Morus notabilis]1.1e-6594.81Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA    FVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADT+NTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

XP_015889484.1 actin-related protein 2/3 complex subunit 5A [Ziziphus jujuba]1.1e-6594.07Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA   EFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSANWI VHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADT+NTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

XP_022133485.1 actin-related protein 2/3 complex subunit 5A [Momordica charantia]6.4e-69100Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

XP_038884940.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida]4.6e-6797.04Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

TrEMBL top hitse value%identityAlignment
A0A0A0KD59 Actin-related protein 2/3 complex subunit 57.2e-6694.07Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA   +FVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADT+NTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

A0A1S3B407 Actin-related protein 2/3 complex subunit 55.0e-6796.3Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA   EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

A0A6J1BVD6 Actin-related protein 2/3 complex subunit 53.1e-69100Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

A0A6P4A354 Actin-related protein 2/3 complex subunit 55.5e-6694.07Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA   EFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSANWI VHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADT+NTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

W9R3V7 Actin-related protein 2/3 complex subunit 55.5e-6694.81Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA    FVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        DRPTCDQCLRIHEKLTERAGLGCILRSLADT+NTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

SwissProt top hitse value%identityAlignment
B3H6Y2 Actin-related protein 2/3 complex subunit 5B1.1e-5579.26Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA AA FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSANWI VHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        D PTC+QCL IHEKLTERAGLGCILR L+DT NTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV

O15511 Actin-related protein 2/3 complex subunit 51.0e-0832.38Show/hide
Query:  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIK--DVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC
        +++S L+Q     AL+ AL+  P NT+ +  K      V + L++ K  D++    SLD    D+LMKY+Y+G  +    +    L+ HEK     G+G 
Subjt:  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIK--DVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC

Query:  ILRSL
        I+R L
Subjt:  ILRSL

Q5R516 Actin-related protein 2/3 complex subunit 51.0e-0832.38Show/hide
Query:  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIK--DVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC
        +++S L+Q     AL+ AL+  P NT+ +  K      V + L++ K  D++    SLD    D+LMKY+Y+G  +    +    L+ HEK     G+G 
Subjt:  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIK--DVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC

Query:  ILRSL
        I+R L
Subjt:  ILRSL

Q6DE18 Actin-related protein 2/3 complex subunit 5-B1.0e-0831.43Show/hide
Query:  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIK--DVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC
        +++SL++Q   + A ++AL  SP N++++  K      V + L + K  +++   ++LDP   D+LMKY+Y+G       +    L+ HEK     GLG 
Subjt:  KIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIK--DVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC

Query:  ILRSL
        I+R L
Subjt:  ILRSL

Q9M117 Actin-related protein 2/3 complex subunit 5A5.1e-6188.55Show/hide
Query:  AEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPT
        AEFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWI VHRALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPT
Subjt:  AEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPT

Query:  CDQCLRIHEKLTERAGLGCILRSLADTINTV
        CDQCL+IHEKLTERAGLGCILR L DTINTV
Subjt:  CDQCLRIHEKLTERAGLGCILRSLADTINTV

Arabidopsis top hitse value%identityAlignment
AT4G01710.1 ARP2/3 complex 16 kDa subunit (p16-Arc)3.6e-6288.55Show/hide
Query:  AEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPT
        AEFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWI VHRALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPT
Subjt:  AEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPT

Query:  CDQCLRIHEKLTERAGLGCILRSLADTINTV
        CDQCL+IHEKLTERAGLGCILR L DTINTV
Subjt:  CDQCLRIHEKLTERAGLGCILRSLADTINTV

AT5G65274.1 ARP2/3 complex 16 kDa subunit (p16-Arc)7.9e-5779.26Show/hide
Query:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG
        MA AA FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSANWI VHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTG
Subjt:  MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTG

Query:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
        D PTC+QCL IHEKLTERAGLGCILR L+DT NTV
Subjt:  DRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTGCAGCTGAATTTGTCGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAGGCCAGT
GGAAGCTCTAAAAACTGCTCTTGAAGGTTCGCCTCCGAATACCCGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGCGGTGCATAGGGCTCTTATGGCTATAAAGGATG
TAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTACTTGTACAGAGGATTGTCAACTGGTGATCGTCCCACATGTGATCAGTGTCTTAGG
ATACATGAAAAATTGACAGAAAGGGCTGGCTTGGGTTGCATTCTTCGTTCCCTTGCAGATACTATCAATACAGTT
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCTGCAGCTGAATTTGTCGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAGGCCAGT
GGAAGCTCTAAAAACTGCTCTTGAAGGTTCGCCTCCGAATACCCGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGCGGTGCATAGGGCTCTTATGGCTATAAAGGATG
TAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTATGATATTCTAATGAAGTACTTGTACAGAGGATTGTCAACTGGTGATCGTCCCACATGTGATCAGTGTCTTAGG
ATACATGAAAAATTGACAGAAAGGGCTGGCTTGGGTTGCATTCTTCGTTCCCTTGCAGATACTATCAATACAGTT
Protein sequenceShow/hide protein sequence
MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLR
IHEKLTERAGLGCILRSLADTINTV