CuGenDBv2

Gene ID	MS003486
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	general transcription factor 3C polypeptide 6-like
Genome location	scaffold234:3109736..3112209
RNA-Seq Expression	MS003486
Synteny	MS003486
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019481 - Transcription factor TFIIIC, triple barrel domain IPR042771 - TFIIIC subunit GTF3C6-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022133708.1 uncharacterized protein LOC111006225 [Momordica charantia]

2.7e-64

100

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLPDSAVPNSTS
        APRKELKPIASVHKILKFKLLPDSAVPNSTS
Subjt:  APRKELKPIASVHKILKFKLLPDSAVPNSTS

XP_022939121.1 uncharacterized protein LOC111445121, partial [Cucurbita moschata]

5.5e-49

79.41

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+V  EEEA PSET  R+ +AV PN+
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLP-----DSAVPNSTS
        APR++LKP+ASVHKILKFKLL      DSAVP+STS
Subjt:  APRKELKPIASVHKILKFKLLP-----DSAVPNSTS

XP_022993830.1 uncharacterized protein LOC111489725 [Cucurbita maxima]

1.2e-48

80.45

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+V  EEEA PS+T  R+ +AV P++
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLP--DSAVPNSTS
        APRK+LKP+ASVHKILKFKLL   DSAVP+STS
Subjt:  APRKELKPIASVHKILKFKLLP--DSAVPNSTS

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]

1.4e-49

80.88

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEK  ID ASDGEE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+V  EEEA PSET  R+ +AV PN+
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLP-----DSAVPNSTS
        APRK+LKP+ASVHKILKFKLL      DSAVP+STS
Subjt:  APRKELKPIASVHKILKFKLLP-----DSAVPNSTS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]

3.6e-48

82.44

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEK TID A D EE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEV VVEEE E  PSE+  R+ EA  P +
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLPDSAVPNSTS
        APRKELKP+ASVHKILKFKLL DSAVPNS S
Subjt:  APRKELKPIASVHKILKFKLLPDSAVPNSTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LML8 TFIIIC_sub6 domain-containing protein

2.0e-44

78.63

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEK TID ASD EE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYEETIGTCLTFAEEEV VV  EEEA PSET+  + E V P +
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLPDSAVPNSTS
        A +KELK +A VHKILKFKLL DS VP+S S
Subjt:  APRKELKPIASVHKILKFKLLPDSAVPNSTS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like

4.9e-43

77.86

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEK TID AS+ EE+YVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYEETIGTCLTFAEEEV VV  EEEA PSET   + EA  P +
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLPDSAVPNSTS
        A RKELK  A VHKILKFKLL DS VP+  S
Subjt:  APRKELKPIASVHKILKFKLLPDSAVPNSTS

A0A6J1BZW5 uncharacterized protein LOC111006225

1.3e-64

100

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLPDSAVPNSTS
        APRKELKPIASVHKILKFKLLPDSAVPNSTS
Subjt:  APRKELKPIASVHKILKFKLLPDSAVPNSTS

A0A6J1FF13 uncharacterized protein LOC111445121

2.7e-49

79.41

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+V  EEEA PSET  R+ +AV PN+
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLP-----DSAVPNSTS
        APR++LKP+ASVHKILKFKLL      DSAVP+STS
Subjt:  APRKELKPIASVHKILKFKLLP-----DSAVPNSTS

A0A6J1JTZ1 uncharacterized protein LOC111489725

5.9e-49

80.45

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Query:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR
        MEK  ID ASDGEE+YVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTFAEEEVS+V  EEEA PS+T  R+ +AV P++
Subjt:  MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNR

Query:  APRKELKPIASVHKILKFKLLP--DSAVPNSTS
        APRK+LKP+ASVHKILKFKLL   DSAVP+STS
Subjt:  APRKELKPIASVHKILKFKLLP--DSAVPNSTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G80745.1 Transcription factor TFIIIC, tau55-related protein

1.1e-18

45.54

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Query:  EEDYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKE-LKPIA
        E+++V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K+K+VGEY  TIGTCL F+++                          N+ P+K+ ++P+A
Subjt:  EEDYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKE-LKPIA

Query:  SVHKILKFKLLP
         +HKILKF+L P
Subjt:  SVHKILKFKLLP

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein

4.4e-20

50.91

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Query:  EEDYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKE-LKPIA
        EE++V++DL +VS  ++IP +APY LSGLDT+NPVLTI  KIK+VGEY ETIGTCL F+        E+EE   SE           N+ P K+ ++P+A
Subjt:  EEDYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKE-LKPIA

Query:  SVHKILKFKL
         +HKILKF+L
Subjt:  SVHKILKFKL

Sequences

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CDS sequence

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ATGGAGAAAACTACAATTGATCCTGCCTCTGATGGCGAGGAAGATTATGTATTGCTCGATCTTGGTGATGTATCGCTTCTTGACATCCCACCCAATGCTCCATATGTTCT
ATCTGGGTTGGACACAATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTTGGAGAATATGAAGAAACAATAGGCACATGTTTGACCTTTGCCGAAGAGGAAG
TCTCTGTGGTTGAAGAAGAAGAAGAAGCAGGGCCATCTGAAACAATTCATCGCACGGCAGAGGCTGTTGCACCAAATCGAGCTCCAAGGAAGGAGTTGAAACCCATTGCT
TCTGTTCATAAGATCCTTAAGTTTAAATTATTGCCTGATTCTGCTGTTCCAAACTCAACATCT

mRNA sequence

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Protein sequence

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MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIA
SVHKILKFKLLPDSAVPNSTS

MS003486 (gene) of Bitter gourd (TR) v1 genome