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MS003496 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003496
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold234:3146554..3146766
RNA-Seq ExpressionMS003496
SyntenyMS003496
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER47504.1 hypothetical protein STAS_24622 [Striga asiatica]3.0e-0952.38Show/hide
Query:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRH
        ++ E+E+ VE EEDE V+G  LAVGLH +EL+L ++PR L+Q+PR +Q+E+YN+D H  P+ H
Subjt:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRH

KAA0056546.1 hypothetical protein E6C27_scaffold288G00480 [Cucumis melo var. makuwa]2.6e-1364.18Show/hide
Query:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD
        MESENE+ +EDEEDESV     +VGLH  ELKL IIP +L+QKP R+Q+E+YN+D H  PIRH FTD
Subjt:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD

KAE8652261.1 hypothetical protein Csa_022581 [Cucumis sativus]7.7e-1361.76Show/hide
Query:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTDT
        MESENED +EDEEDESV     ++GLH  +LKL II R+L+QK RR+Q+E+YN+D H  PIRH F DT
Subjt:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTDT

KAG6578364.1 hypothetical protein SDJN03_22812, partial [Cucurbita argyrosperma subsp. sororia]5.1e-1770Show/hide
Query:  ESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTDTAIH
        ESENEDGV+D+E+E VNG GL+VGLHT +LKL IIPR+LEQKP REQ+EQYN+DH+  PIRH F D  +H
Subjt:  ESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTDTAIH

KAG6602686.1 Actin-related protein 2/3 complex subunit 2A, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2077.61Show/hide
Query:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD
        M+SENEDG+EDEEDES+N Y   V LHT ELKLPIIPRELEQKP R+QHEQ N+DHHWRPIRHR  D
Subjt:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD

TrEMBL top hitse value%identityAlignment
A0A0A0LT04 Uncharacterized protein3.7e-1361.76Show/hide
Query:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTDT
        MESENED +EDEEDESV     ++GLH  +LKL II R+L+QK RR+Q+E+YN+D H  PIRH F DT
Subjt:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTDT

A0A0B2R840 Uncharacterized protein1.0e-0757.81Show/hide
Query:  ENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD
        E+EDGVE EEDE V+  G AVGLH  ELKL  +PR+ E++PR EQHEQ   D +  PI H  TD
Subjt:  ENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD

A0A445GEX9 Uncharacterized protein1.0e-0757.81Show/hide
Query:  ENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD
        E+EDGVE EEDE V+  G AVGLH  ELKL  +PR+ E++PR EQHEQ   D +  PI H  TD
Subjt:  ENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD

A0A5A7QQI9 Uncharacterized protein1.5e-0952.38Show/hide
Query:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRH
        ++ E+E+ VE EEDE V+G  LAVGLH +EL+L ++PR L+Q+PR +Q+E+YN+D H  P+ H
Subjt:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRH

A0A5D3BWV4 Uncharacterized protein1.3e-1364.18Show/hide
Query:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD
        MESENE+ +EDEEDESV     +VGLH  ELKL IIP +L+QKP R+Q+E+YN+D H  PIRH FTD
Subjt:  MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGCGAGAATGAAGACGGCGTAGAGGATGAAGAAGATGAGAGTGTGAATGGCTATGGCCTTGCCGTTGGTCTTCATACTGCCGAACTCAAACTGCCGATTATTCC
CCGGGAATTGGAACAGAAGCCCCGGCGAGAGCAGCACGAACAGTACAACGCCGATCACCACTGGCGCCCAATCCGACATCGTTTCACAGATACCGCTATTCAC
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGCGAGAATGAAGACGGCGTAGAGGATGAAGAAGATGAGAGTGTGAATGGCTATGGCCTTGCCGTTGGTCTTCATACTGCCGAACTCAAACTGCCGATTATTCC
CCGGGAATTGGAACAGAAGCCCCGGCGAGAGCAGCACGAACAGTACAACGCCGATCACCACTGGCGCCCAATCCGACATCGTTTCACAGATACCGCTATTCAC
Protein sequenceShow/hide protein sequence
MESENEDGVEDEEDESVNGYGLAVGLHTAELKLPIIPRELEQKPRREQHEQYNADHHWRPIRHRFTDTAIH