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MS003500 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003500
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein
Genome locationscaffold234:3153100..3153432
RNA-Seq ExpressionMS003500
SyntenyMS003500
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2984475.1 uncharacterized protein LOC105177442 [Olea europaea subsp. europaea]7.3e-1044.44Show/hide
Query:  SRAFYQLSSMIVDVLRIPPFPI--PILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILS
        +R  Y L SMI+ ++R PP P+  P L       S P   S        SPA F SLFI IS+AL+LFG++  +IG +L+PL+IT++LLFY   ++S LS
Subjt:  SRAFYQLSSMIVDVLRIPPFPI--PILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILS

Query:  NFARSLLC
         F R++LC
Subjt:  NFARSLLC

EXC33378.1 hypothetical protein L484_010788 [Morus notabilis]9.5e-1045.79Show/hide
Query:  SRAFYQLSSMIVDVLRIPPFPIP--ILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILS
        SR F++LSSMI+ +L++PP PIP  I  SS +A +  S+       ++ASP  FASLF+ IS+AL+LFG++   IGF+L+PL++ ++LLFY   ++  LS
Subjt:  SRAFYQLSSMIVDVLRIPPFPIP--ILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILS

Query:  NFARSLL
           RS+L
Subjt:  NFARSLL

KAE8021313.1 hypothetical protein FH972_007215 [Carpinus fangiana]2.3e-1148.11Show/hide
Query:  SRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNF
        S   Y+L SMIV +LR PP P P          FP+  ++   + + SPA F SLF+ IS+AL+LFG++   IGF+L+PL+I ++LLFYF   VSILS F
Subjt:  SRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNF

Query:  ARSLLC
         RS+LC
Subjt:  ARSLLC

KAG8384982.1 hypothetical protein BUALT_Bualt04G0174800 [Buddleja alternifolia]4.3e-1045.87Show/hide
Query:  DDSRAFYQLSSMIVDVLRIPPFPI--PILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSI
        + +R  Y+L SMI+ + R PP PI  P L+S  ++ S P         S  SPA F SLFI IS+AL+LFG++  +IGF+L+PL+I +++LFYF  +VS 
Subjt:  DDSRAFYQLSSMIVDVLRIPPFPI--PILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSI

Query:  LSNFARSLL
        LS   RS+L
Subjt:  LSNFARSLL

XP_022134096.1 uncharacterized protein LOC111006451 [Momordica charantia]1.3e-4399.1Show/hide
Query:  RRRDDSRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVS
        RRRDDSRA YQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVS
Subjt:  RRRDDSRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVS

Query:  ILSNFARSLLC
        ILSNFARSLLC
Subjt:  ILSNFARSLLC

TrEMBL top hitse value%identityAlignment
A0A067JS94 Uncharacterized protein2.3e-0942.45Show/hide
Query:  SRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNF
        SR FY+LSS+++++LR PP PIP+   +L   S  +     + T+  SPA FASL + IS+AL+L G++   IGF+L+P ++ ++++FY   +VS +S  
Subjt:  SRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNF

Query:  ARSLLC
         RSLLC
Subjt:  ARSLLC

A0A5N6QUQ1 Uncharacterized protein1.1e-1148.11Show/hide
Query:  SRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNF
        S   Y+L SMIV +LR PP P P          FP+  ++   + + SPA F SLF+ IS+AL+LFG++   IGF+L+PL+I ++LLFYF   VSILS F
Subjt:  SRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNF

Query:  ARSLLC
         RS+LC
Subjt:  ARSLLC

A0A6I9UFL0 uncharacterized protein LOC1051774421.0e-0948.57Show/hide
Query:  SRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNF
        +R  Y+L SMI+ +LR PP PI   + SL + S PS  S  +  +  SPA F SLFI IS+AL+LFG++  +IG +L+PL+IT++LLFYF  +VS LS  
Subjt:  SRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNF

Query:  ARSLL
         R +L
Subjt:  ARSLL

A0A6J1BX03 uncharacterized protein LOC1110064516.4e-4499.1Show/hide
Query:  RRRDDSRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVS
        RRRDDSRA YQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVS
Subjt:  RRRDDSRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVS

Query:  ILSNFARSLLC
        ILSNFARSLLC
Subjt:  ILSNFARSLLC

W9SAM7 Uncharacterized protein4.6e-1045.79Show/hide
Query:  SRAFYQLSSMIVDVLRIPPFPIP--ILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILS
        SR F++LSSMI+ +L++PP PIP  I  SS +A +  S+       ++ASP  FASLF+ IS+AL+LFG++   IGF+L+PL++ ++LLFY   ++  LS
Subjt:  SRAFYQLSSMIVDVLRIPPFPIP--ILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILS

Query:  NFARSLL
           RS+L
Subjt:  NFARSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27290.1 unknown protein2.7e-1039.02Show/hide
Query:  RRRDD--SRAFYQLSSMIVDVLRIPPFPIPI----------LASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLIT
        R+RD+  SR FY LSS+++++LR PP PI +          +    ++  F S    LA     SP+ FASL + IS+AL+L G++   IGFLL+P ++ 
Subjt:  RRRDD--SRAFYQLSSMIVDVLRIPPFPIPI----------LASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLIT

Query:  VLLLFYFFNVVSILSNFARSLLC
        ++L+FY   +VS +S   RS+LC
Subjt:  VLLLFYFFNVVSILSNFARSLLC

AT1G27290.2 unknown protein2.7e-1039.02Show/hide
Query:  RRRDD--SRAFYQLSSMIVDVLRIPPFPIPI----------LASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLIT
        R+RD+  SR FY LSS+++++LR PP PI +          +    ++  F S    LA     SP+ FASL + IS+AL+L G++   IGFLL+P ++ 
Subjt:  RRRDD--SRAFYQLSSMIVDVLRIPPFPIPI----------LASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLIT

Query:  VLLLFYFFNVVSILSNFARSLLC
        ++L+FY   +VS +S   RS+LC
Subjt:  VLLLFYFFNVVSILSNFARSLLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGTCGACGAGACGATTCTAGGGCTTTTTACCAGCTCTCCTCCATGATCGTCGACGTCCTCAGAATCCCTCCCTTCCCGATCCCCATCCTCGCCTCCTCCCTCACCGCCGG
ATCTTTCCCGTCCAAGCACAGCCTCCTCGCCCTCACCTCCAGTGCCTCTCCGGCGGTCTTCGCCTCGCTTTTCATCGCGATTTCCATGGCTTTGATTCTCTTCGGAACCA
TCGCCCTCATGATTGGATTCCTGTTGGTTCCTCTCCTCATTACCGTGCTCCTTCTCTTCTACTTCTTCAACGTGGTTTCCATTCTGTCCAATTTTGCTCGCTCGCTGCTC
TGC
mRNA sequenceShow/hide mRNA sequence
CGTCGACGAGACGATTCTAGGGCTTTTTACCAGCTCTCCTCCATGATCGTCGACGTCCTCAGAATCCCTCCCTTCCCGATCCCCATCCTCGCCTCCTCCCTCACCGCCGG
ATCTTTCCCGTCCAAGCACAGCCTCCTCGCCCTCACCTCCAGTGCCTCTCCGGCGGTCTTCGCCTCGCTTTTCATCGCGATTTCCATGGCTTTGATTCTCTTCGGAACCA
TCGCCCTCATGATTGGATTCCTGTTGGTTCCTCTCCTCATTACCGTGCTCCTTCTCTTCTACTTCTTCAACGTGGTTTCCATTCTGTCCAATTTTGCTCGCTCGCTGCTC
TGC
Protein sequenceShow/hide protein sequence
RRRDDSRAFYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISMALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLL
C