; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003520 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003520
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein-like protein
Genome locationscaffold234:3266809..3267282
RNA-Seq ExpressionMS003520
SyntenyMS003520
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602699.1 hypothetical protein SDJN03_07932, partial [Cucurbita argyrosperma subsp. sororia]5.2e-7091.82Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
        MATLHKFKLLASQC V GSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDD++DDENMIPEKN+KEVRARRKLKDLFVSSPP +D
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD

Query:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
        KVSD RIEEQEGLLTA N SAAGIG TSTTRRSLRPIS+TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

XP_022134107.1 uncharacterized protein LOC111006461 [Momordica charantia]5.2e-78100Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
        MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD

Query:  KVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

XP_022960038.1 uncharacterized protein LOC111460905 [Cucurbita moschata]4.0e-7091.82Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
        MATLHKFKLLASQC V GSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDD++DDENMIPEKN+KEV+ARRKLKDLFVSSPP +D
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD

Query:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTA N SAAGIG TSTTRRSLRPIS+TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

XP_022990769.1 uncharacterized protein LOC111487551 [Cucurbita maxima]3.1e-7092.45Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
        MATLHKFKLLASQC V GSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDD++DDENMIPEKN+KEVRARRKLKDLFVSSPP +D
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD

Query:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
         VSDRRIEEQEGLLTA NTSAAGIG TSTTRRSLRPIS+TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

XP_023546418.1 uncharacterized protein LOC111805523 [Cucurbita pepo subsp. pepo]1.4e-7092.45Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
        MATLHKFKLLASQC V GSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDD++DDENMIPEKN+KEVRARRKLKDLFVSSPP +D
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD

Query:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTA N SAAGIG TSTTRRSLRPIS+TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

TrEMBL top hitse value%identityAlignment
A0A6J1BYN1 uncharacterized protein LOC1110064612.5e-78100Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
        MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD

Query:  KVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

A0A6J1FG66 uncharacterized protein LOC1114451197.6e-6788.12Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDV-DDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGD
        MATLHKFKLLASQC VAG PT+SPTASPV HLRRRRRKTLRMLLNR DRRRFPYQDNSADPQDV DD++DD+NMIPEKN+KEVRARRKLKDLFVSSPP +
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDV-DDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGD

Query:  DKVSDRRIEEQEGLLTASNTSAAGIGT-STTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQE LLT +NTSAAGIGT S TRRSLRPIS+TFRYRFLRRAWRPVLV IPE
Subjt:  DKVSDRRIEEQEGLLTASNTSAAGIGT-STTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

A0A6J1H7N8 uncharacterized protein LOC1114609051.9e-7091.82Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
        MATLHKFKLLASQC V GSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDD++DDENMIPEKN+KEV+ARRKLKDLFVSSPP +D
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD

Query:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTA N SAAGIG TSTTRRSLRPIS+TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

A0A6J1JSX9 uncharacterized protein LOC1114875511.5e-7092.45Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD
        MATLHKFKLLASQC V GSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDD++DDENMIPEKN+KEVRARRKLKDLFVSSPP +D
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDD

Query:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
         VSDRRIEEQEGLLTA NTSAAGIG TSTTRRSLRPIS+TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTASNTSAAGIG-TSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

A0A6J1JYC4 uncharacterized protein LOC1114894142.0e-6788.75Show/hide
Query:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDV-DDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGD
        MATLHKFKLLASQC VAG PT+SPTASPV HLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDV DD++DD+NMIPEKN+KEVRARRKLKDLFVSSPP +
Subjt:  MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDV-DDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGD

Query:  DKVSDRRIEEQEGLLTASNTSAAGIGT-STTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQE LLT +NTSAAGIGT S TRRSLRPIS+TFRYRFLRRAWRPVLV IPE
Subjt:  DKVSDRRIEEQEGLLTASNTSAAGIGT-STTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown2.4e-2045.66Show/hide
Query:  TLHKFKLLASQC-TVAGSPTRSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPP---
        +L KFKLLA+ C TVA SPTR    SPVIHL  RRRKTLR+LL R +DR R P   N+ D     D+             ++R+ RKL DLFVSSPP   
Subjt:  TLHKFKLLASQC-TVAGSPTRSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPP---

Query:  -----GDDKVSDRRIEEQEGLLTASNTSAAGIGTSTTRR------SLRPISS-TFRYRFLRRAWRPVLVAIPE
             G DK +   +E +  +     ++ AG G   T R      S+RP+SS T R R LRR+WRPVLV IPE
Subjt:  -----GDDKVSDRRIEEQEGLLTASNTSAAGIGTSTTRR------SLRPISS-TFRYRFLRRAWRPVLVAIPE

AT1G68430.1 unknown protein7.2e-0934.73Show/hide
Query:  MATLHKFKLLASQCTVAG-SPTRSPT--ASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPP
        MATL +FK L +QC VA  SPTRSP+   SP++ L RR++ TL+MLL+     R                  ++  +   + K+V A RKLKDLFVSS  
Subjt:  MATLHKFKLLASQCTVAG-SPTRSPT--ASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPP

Query:  G------DDKVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE
               D++   +  EE    + A   +A+ +   +      P+   F  R L+RAWRP L  I E
Subjt:  G------DDKVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE

AT5G16200.1 50S ribosomal protein-related7.9e-1640.48Show/hide
Query:  MATLHKFKLLAS----QCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRT--DRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVS
        ++ LHKFKL A+    + + AGSPT SPT SPV +L  RRRKTLRML +++   RRR   Q     P      E D N   +K       RRKL++L V+
Subjt:  MATLHKFKLLAS----QCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRT--DRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVS

Query:  --SPPGDDKVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISS--TFRYRFLRRAWRPVLVAIPE
          SPP   +     I E+   ++  N ++ G G   T R      S  +FR R LR+ WRPVLV+IPE
Subjt:  --SPPGDDKVSDRRIEEQEGLLTASNTSAAGIGTSTTRRSLRPISS--TFRYRFLRRAWRPVLVAIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACCTTGCATAAATTCAAGCTCTTAGCCTCCCAATGTACCGTTGCTGGAAGCCCTACCCGAAGCCCCACCGCTAGCCCCGTAATTCACCTCCGCCGCCGCCGCCG
AAAAACCCTAAGAATGCTCCTCAATCGCACCGATCGCCGCCGATTTCCCTATCAAGATAACTCCGCCGATCCTCAAGATGTCGACGACGAGGAGGACGATGAGAATATGA
TTCCCGAGAAAAATGAGAAGGAGGTCAGAGCCAGGCGGAAACTCAAGGATTTGTTCGTCTCCTCGCCGCCGGGAGATGATAAGGTCTCCGATAGGAGAATCGAAGAGCAG
GAGGGATTGTTAACGGCGTCTAACACCAGCGCCGCCGGAATCGGTACCTCCACCACTCGCCGCTCCCTGAGGCCGATATCGTCGACATTCCGTTACAGATTTCTCCGACG
AGCTTGGCGTCCGGTGCTCGTCGCCATTCCCGAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACCTTGCATAAATTCAAGCTCTTAGCCTCCCAATGTACCGTTGCTGGAAGCCCTACCCGAAGCCCCACCGCTAGCCCCGTAATTCACCTCCGCCGCCGCCGCCG
AAAAACCCTAAGAATGCTCCTCAATCGCACCGATCGCCGCCGATTTCCCTATCAAGATAACTCCGCCGATCCTCAAGATGTCGACGACGAGGAGGACGATGAGAATATGA
TTCCCGAGAAAAATGAGAAGGAGGTCAGAGCCAGGCGGAAACTCAAGGATTTGTTCGTCTCCTCGCCGCCGGGAGATGATAAGGTCTCCGATAGGAGAATCGAAGAGCAG
GAGGGATTGTTAACGGCGTCTAACACCAGCGCCGCCGGAATCGGTACCTCCACCACTCGCCGCTCCCTGAGGCCGATATCGTCGACATTCCGTTACAGATTTCTCCGACG
AGCTTGGCGTCCGGTGCTCGTCGCCATTCCCGAG
Protein sequenceShow/hide protein sequence
MATLHKFKLLASQCTVAGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDNSADPQDVDDEEDDENMIPEKNEKEVRARRKLKDLFVSSPPGDDKVSDRRIEEQ
EGLLTASNTSAAGIGTSTTRRSLRPISSTFRYRFLRRAWRPVLVAIPE