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MS003523 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003523
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionC2H2-like zinc finger protein
Genome locationscaffold234:3283442..3283555
RNA-Seq ExpressionMS003523
SyntenyMS003523
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009736 - cytokinin-activated signaling pathway (biological process)
GO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0009788 - negative regulation of abscisic acid-activated signaling pathway (biological process)
GO:0010090 - trichome morphogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0004045 - aminoacyl-tRNA hydrolase activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR044299 - Zinc finger protein GIS3/ZFP5/ZFP6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578343.1 Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. sororia]2.5e-1089.47Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        KFECQYCCR FSNSQALGGHQNAHREER+LLKRA +KS
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
XP_022939247.1 zinc finger protein 6-like [Cucurbita moschata]2.5e-1089.47Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        KFECQYCCR FSNSQALGGHQNAHREER+LLKRA +KS
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
XP_022993371.1 zinc finger protein 6-like [Cucurbita maxima]2.5e-1089.47Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        KFECQYCCR FSNSQALGGHQNAHREER+LLKRA +KS
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
XP_023550962.1 zinc finger protein 6-like [Cucurbita pepo subsp. pepo]2.5e-1089.47Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        KFECQYCCR FSNSQALGGHQNAHREER+LLKRA +KS
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
XP_038886238.1 zinc finger protein 6-like [Benincasa hispida]6.6e-1192.11Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        KFECQYCCREFSNSQALGGHQNAHREERQLLK A +KS
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
TrEMBL top hitse value%identityAlignment
A0A059BSP6 C2H2-type domain-containing protein6.0e-1083.78Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLK
        KFECQYCCREF+NSQALGGHQNAH++ERQLLKRA ++
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLK
A0A6A3BHC7 Serine hydroxymethyltransferase 16.0e-1078.95Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        K+ECQYCCREF+NSQALGGHQNAH++ERQ +KRAHL++
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
A0A6J1FG99 zinc finger protein 6-like1.2e-1089.47Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        KFECQYCCR FSNSQALGGHQNAHREER+LLKRA +KS
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
A0A6J1JW51 zinc finger protein 6-like1.2e-1089.47Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        KFECQYCCR FSNSQALGGHQNAHREER+LLKRA +KS
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
A0A6P5XKC3 zinc finger protein 6-like2.7e-1084.21Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        KFECQYCCREFSNSQALGGHQNAH++ERQLLKRA +++
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
SwissProt top hitse value%identityAlignment
P93751 Zinc finger protein 87.8e-0763.16Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        +FEC YC R F  SQALGGHQNAH+ ERQ  KR  + S
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
Q39264 Zinc finger protein 54.6e-0763.16Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        + ECQYC +EF+NSQALGGHQNAH++ER   KR  L++
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
Q39265 Zinc finger protein 64.7e-1283.33Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHL
        K+ECQYCCREF+NSQALGGHQNAH++ERQLLKRA +
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHL
Q84WI0 Zinc finger protein GIS2.7e-0772.73Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKR
        +FEC YC R F  SQALGGHQNAH+ ERQL KR
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKR
Q9C9H1 Zinc finger protein GIS31.4e-1178.95Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        K+ECQYCCREF NSQALGGHQNAH++ERQ LKRA L++
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
Arabidopsis top hitse value%identityAlignment
AT1G10480.1 zinc finger protein 53.2e-0863.16Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        + ECQYC +EF+NSQALGGHQNAH++ER   KR  L++
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
AT1G67030.1 zinc finger protein 63.3e-1383.33Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHL
        K+ECQYCCREF+NSQALGGHQNAH++ERQLLKRA +
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHL
AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein9.7e-1378.95Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        K+ECQYCCREF NSQALGGHQNAH++ERQ LKRA L++
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
AT2G41940.1 zinc finger protein 85.5e-0863.16Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
        +FEC YC R F  SQALGGHQNAH+ ERQ  KR  + S
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS
AT3G58070.1 C2H2 and C2HC zinc fingers superfamily protein1.9e-0872.73Show/hide
Query:  KFECQYCCREFSNSQALGGHQNAHREERQLLKR
        +FEC YC R F  SQALGGHQNAH+ ERQL KR
Subjt:  KFECQYCCREFSNSQALGGHQNAHREERQLLKR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTTTGAGTGCCAATATTGTTGCAGAGAGTTCTCAAATTCACAAGCTTTGGGCGGCCATCAAAACGCCCACAGAGAAGAAAGACAGCTCCTGAAGCGGGCCCACTTGAA
ATCT
mRNA sequenceShow/hide mRNA sequence
AAGTTTGAGTGCCAATATTGTTGCAGAGAGTTCTCAAATTCACAAGCTTTGGGCGGCCATCAAAACGCCCACAGAGAAGAAAGACAGCTCCTGAAGCGGGCCCACTTGAA
ATCT
Protein sequenceShow/hide protein sequence
KFECQYCCREFSNSQALGGHQNAHREERQLLKRAHLKS