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MS003563 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003563
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II protein D1
Genome locationscaffold234:3578923..3579041
RNA-Seq ExpressionMS003563
SyntenyMS003563
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVW85400.1 unnamed protein product, partial [Nymphaea colorata]4.1e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

VVW87558.1 unnamed protein product, partial [Nymphaea colorata]4.1e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

VVW88512.1 unnamed protein product, partial [Nymphaea colorata]4.1e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

VVW89873.1 unnamed protein product, partial [Nymphaea colorata]4.1e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

VVW93379.1 unnamed protein product, partial [Nymphaea colorata]4.1e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

TrEMBL top hitse value%identityAlignment
A0A5K1HBD1 Uncharacterized protein ycf72 (Fragment)2.0e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

A0A5K1HKC7 Uncharacterized protein ycf72 (Fragment)2.0e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

A0A5K1HQ33 Uncharacterized protein ycf72 (Fragment)2.0e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

A0A5K1HS13 Uncharacterized protein ycf72 (Fragment)2.0e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

A0A5K1HV01 Uncharacterized protein ycf72 (Fragment)2.0e-0882.05Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF A  LPTCPT+ EQFLDIK+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

SwissProt top hitse value%identityAlignment
P0C308 Uncharacterized protein ycf725.0e-0971.79Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF    LPTCPT+ +QF D K+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

P0C309 Uncharacterized protein ycf725.0e-0971.79Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF    LPTCPT+ +QF D K+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

Q36996 Uncharacterized protein ycf725.0e-0971.79Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF    LPTCPT+ +QF D K+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

Q37082 Uncharacterized protein ycf725.0e-0971.79Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF    LPTCPT+ +QF D K+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

Q6ENC9 Uncharacterized protein ycf725.0e-0971.79Show/hide
Query:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP
        LPSQHLD ALPKLFWF    LPTCPT+ +QF D K+TSP
Subjt:  LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTACCTAGCCAACATTTAGATCTGGCTCTACCCAAACTTTTCTGGTTTCCAGCATTCCAACTCCCCACTTGTCCAACTATTGTTGAGCAATTTTTAGATATCAAACAGAC
CTCTCCA
mRNA sequenceShow/hide mRNA sequence
TTACCTAGCCAACATTTAGATCTGGCTCTACCCAAACTTTTCTGGTTTCCAGCATTCCAACTCCCCACTTGTCCAACTATTGTTGAGCAATTTTTAGATATCAAACAGAC
CTCTCCA
Protein sequenceShow/hide protein sequence
LPSQHLDLALPKLFWFPAFQLPTCPTIVEQFLDIKQTSP