CuGenDBv2

Gene ID	MS003564
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Tubulin-folding cofactor E
Genome location	scaffold234:3592209..3593020
RNA-Seq Expression	MS003564
Synteny	MS003564
Gene Ontology terms	GO:0000226 - microtubule cytoskeleton organization (biological process) GO:0007021 - tubulin complex assembly (biological process) GO:0007023 - post-chaperonin tubulin folding pathway (biological process) GO:0005737 - cytoplasm (cellular component) GO:0043014 - alpha-tubulin binding (molecular function)
InterPro domains	IPR029071 - Ubiquitin-like domain superfamily IPR044079 - TBCE, ubiquitin-like (Ubl) domain IPR044994 - Tubulin-specific chaperone E

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578311.1 Tubulin-folding cofactor E, partial [Cucurbita argyrosperma subsp. sororia]

7.0e-60

90.98

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKLDSNPEETLRLHPRFEELK F+GIEDNR+SVG  GPQKLASGLISITL CVGASIGEKPPLTKKLP TT+VGKLKMLCESFFKLKC++LKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        QDSPVPIPLEDDMASLMDLGV N SNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

KAG7015887.1 Tubulin-folding cofactor E [Cucurbita argyrosperma subsp. argyrosperma]

7.0e-60

90.98

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKLDSNPEETLRLHPRFEELK F+GIEDNR+SVG  GPQKLASGLISITL CVGASIGEKPPLTKKLP TT+VGKLKMLCESFFKLKC++LKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        QDSPVPIPLEDDMASLMDLGV N SNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

XP_022152477.1 tubulin-folding cofactor E [Momordica charantia]

3.5e-67

100

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

XP_022939765.1 tubulin-folding cofactor E [Cucurbita moschata]

7.0e-60

90.98

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKLDSNPEETLRLHPRFEELK F+GIEDNR+SVG  GPQKLASGLISITL CVGASIGEKPPLTKKLP TT+VGKLKMLCESFFKLKC++LKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        QDSPVPIPLEDDMASLMDLGV N SNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

XP_023551442.1 tubulin-folding cofactor E [Cucurbita pepo subsp. pepo]

7.0e-60

90.98

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKLDSNPEETLRLHPRFEELK F+GIEDNR+SVG  GPQKLASGLISITL CVGASIGEKPPLTKKLP TT+VGKLKMLCESFFKLKC++LKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        QDSPVPIPLEDDMASLMDLGV N SNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXY2 Uncharacterized protein

2.9e-59

90.23

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMS LD N EETLRLHPRFEELKSF+GIEDN  SVGPAGPQKL+SGLISITLKCVGASIGEKPP+TKKLPPTTSVGKLKMLCESFFKLK IKLKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        +DSP+PI LEDDM SLMDLGVGNESNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

A0A1S3BEU4 Tubulin-folding cofactor E

7.1e-58

87.97

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMS LD N E+T RLHPRFEELK F+GIEDNR SVGPAGPQKL+SGLISITLKCVGASIGEKPP+TKKLPP TSVGKLKMLCESFFKLK IKLKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        +DSP+PI LEDDM SLMDLGVGNESNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

A0A6J1DEY9 Tubulin-folding cofactor E

1.7e-67

100

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

A0A6J1FNN5 Tubulin-folding cofactor E

3.4e-60

90.98

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKLDSNPEETLRLHPRFEELK F+GIEDNR+SVG  GPQKLASGLISITL CVGASIGEKPPLTKKLP TT+VGKLKMLCESFFKLKC++LKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        QDSPVPIPLEDDMASLMDLGV N SNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

A0A6J1K072 Tubulin-folding cofactor E

1.7e-59

90.23

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKLDSNPEETLRLHPRFEELK F+GIEDNR+SVG  GPQKLASGLISITL CVGASIGEKPPLTKKLP TT+VGKLKMLCESFFKLKC++LKLYLQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        QDSPVPI LEDDMASLMDLGV N SNILVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

SwissProt top hits

e value

%identity

Alignment

Q8GRL7 Tubulin-folding cofactor E

2.1e-38

61.65

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKL+    E   LHPRF ELK  HGIED R S   +GP+ +ASGLISITLKCVG S+GEKP LTKKLP + +VGKLK+L E+FFKLK IK +L+LQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        + SP P  L+D+ A+L+D+G+ + S +LVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

Arabidopsis top hits

e value

%identity

Alignment

AT1G71440.1 tubulin folding cofactor E / Pfifferling (PFI)

1.5e-39

61.65

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Query:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE
        MVMSKL+    E   LHPRF ELK  HGIED R S   +GP+ +ASGLISITLKCVG S+GEKP LTKKLP + +VGKLK+L E+FFKLK IK +L+LQE
Subjt:  MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQE

Query:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES
        + SP P  L+D+ A+L+D+G+ + S +LVDEES
Subjt:  QDSPVPIPLEDDMASLMDLGVGNESNILVDEES

Sequences

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CDS sequence

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ATGGTTATGTCAAAGTTGGATAGCAATCCTGAGGAAACATTAAGGCTACATCCTAGGTTTGAAGAGCTTAAGAGTTTTCATGGGATTGAAGATAACAGATTGTCAGTCGG
ACCTGCTGGACCCCAGAAACTGGCTTCTGGCCTCATATCAATCACTCTAAAGTGCGTGGGAGCATCAATTGGTGAGAAGCCACCATTGACAAAGAAATTACCACCCACTA
CTTCAGTTGGCAAGTTAAAGATGCTTTGTGAAAGCTTTTTCAAACTGAAATGTATCAAGCTTAAGTTGTATCTTCAAGAACAGGATTCGCCCGTGCCGATACCACTTGAG
GATGATATGGCGTCTCTTATGGATCTCGGCGTTGGCAATGAGTCTAACATTCTTGTGGATGAAGAGAGT

mRNA sequence

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Protein sequence

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MVMSKLDSNPEETLRLHPRFEELKSFHGIEDNRLSVGPAGPQKLASGLISITLKCVGASIGEKPPLTKKLPPTTSVGKLKMLCESFFKLKCIKLKLYLQEQDSPVPIPLE
DDMASLMDLGVGNESNILVDEES

MS003564 (gene) of Bitter gourd (TR) v1 genome