; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003565 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003565
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTubulin-folding cofactor E
Genome locationscaffold234:3593970..3595001
RNA-Seq ExpressionMS003565
SyntenyMS003565
Gene Ontology termsGO:0006457 - protein folding (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0043014 - alpha-tubulin binding (molecular function)
InterPro domainsIPR001611 - Leucine-rich repeat
IPR032675 - Leucine-rich repeat domain superfamily
IPR044994 - Tubulin-specific chaperone E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445986.1 PREDICTED: tubulin-folding cofactor E isoform X1 [Cucumis melo]5.7e-6484.18Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID 
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LNSFP LIDIRLSEN IADP RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

XP_008445987.1 PREDICTED: tubulin-folding cofactor E isoform X2 [Cucumis melo]5.7e-6484.18Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID 
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LNSFP LIDIRLSEN IADP RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

XP_008445988.1 PREDICTED: tubulin-folding cofactor E isoform X3 [Cucumis melo]5.7e-6484.18Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID 
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LNSFP LIDIRLSEN IADP RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

XP_011660193.1 tubulin-folding cofactor E isoform X2 [Cucumis sativus]2.2e-6382.28Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QL+SLEQIQLNNNKLS IFYP L EL+ELFG VES GD FPFQNLRCL LGGNNI+  ASID 
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LNSFP LIDIRLSEN IADP RGGIPRYVL+ARLSK+Q+INGSE VTPRERRDSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

XP_022152477.1 tubulin-folding cofactor E [Momordica charantia]4.8e-7996.84Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S   PVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYP LYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSE VTPRERRDSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

TrEMBL top hitse value%identityAlignment
A0A0A0LXN7 Uncharacterized protein2.8e-6483.33Show/hide
Query:  QPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNS
        +P SS MV+GFNLLRLLNLENN IAEWNEILKL QL+SLEQIQLNNNKLS IFYP L EL+ELFG VES GD FPFQNLRCL LGGNNI+  ASID LNS
Subjt:  QPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNS

Query:  FPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRYG
        FP LIDIRLSEN IADP RGGIPRYVL+ARLSK+Q+INGSE VTPRERRDSEIRYG
Subjt:  FPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRYG

A0A1S3BEN9 Tubulin-folding cofactor E2.8e-6484.18Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID 
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LNSFP LIDIRLSEN IADP RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

A0A1S3BEU4 Tubulin-folding cofactor E2.8e-6484.18Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID 
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LNSFP LIDIRLSEN IADP RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

A0A5A7SYG1 Tubulin-folding cofactor E2.8e-6484.18Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S  +P SS MV+GFNLLRLLNLENN IAEWNEILKL QLRSLEQIQLNNNKLS IFYP L EL+ELFG VE  GD FPFQNLRCL LGGNNI+D ASID 
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LNSFP LIDIRLSEN IADP RGGIPRYVLIARLSK+QIINGSE VTPRERRDSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

A0A6J1DEY9 Tubulin-folding cofactor E2.3e-7996.84Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S   PVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYP LYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSE VTPRERRDSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

SwissProt top hitse value%identityAlignment
Q5PQJ7 Tubulin-specific chaperone cofactor E-like protein2.4e-1235.19Show/hide
Query:  FQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKL-CQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFP--FQNLRCLLLGGNNIEDFASID
        ++ VS P V   + L+LL++ +N + EW EI KL     SL+ + L NN ++                +E P D+    F NLR + L  + ++ +  ID
Subjt:  FQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKL-CQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFP--FQNLRCLLLGGNNIEDFASID

Query:  CLNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSE---IRY
         LNSFP+L ++RL    +  P      R +++ARL  V  +NGS VVT  ER DSE   IRY
Subjt:  CLNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSE---IRY

Q5QJ74 Tubulin-specific chaperone cofactor E-like protein3.1e-1235.19Show/hide
Query:  FQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKL-CQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFP--FQNLRCLLLGGNNIEDFASID
        ++ VS P +   + L+LL++ +N + +W EI KL     SL+ + L NN L+                +E P D+    F NLR + L  + ++ +  ID
Subjt:  FQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKL-CQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFP--FQNLRCLLLGGNNIEDFASID

Query:  CLNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSE---IRY
         LNSFP+L ++RL    +  P      R ++IARL  V  +NGS VVT  ER DSE   IRY
Subjt:  CLNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSE---IRY

Q5U508 Tubulin-specific chaperone E3.0e-0726.17Show/hide
Query:  VQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDI
        V     L +L++ NN+I + N++  +  L  L+Q+ ++NN +S I +P +             G    F +L  L + GNNI ++  I+ L+    L  +
Subjt:  VQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLIDI

Query:  RLSENLIADPGRG-GIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
            N + D  +     R ++IA++  ++ +N +E+  P ERR +E+ Y
Subjt:  RLSENLIADPGRG-GIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

Q8C5W3 Tubulin-specific chaperone cofactor E-like protein2.4e-1235.19Show/hide
Query:  FQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKL-CQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFP--FQNLRCLLLGGNNIEDFASID
        ++ VS P V   + L+LL++ +N + +W EI KL     SL+ + L NN L+                +E P D+    F NLR + L  + ++ +  ID
Subjt:  FQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKL-CQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFP--FQNLRCLLLGGNNIEDFASID

Query:  CLNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSE---IRY
         LNSFP+L ++RL    +  P      R +++ARL  V  +NGS VVT  ER DSE   IRY
Subjt:  CLNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSE---IRY

Q8GRL7 Tubulin-folding cofactor E2.2e-4258.23Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S     SS   Q FN LRLLNL++N I++W+E+LKL QL  LEQ+ LN NKLSRIF         + G   S   + PF +L CLLLG NNI D AS+D 
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LN FPQL+DIRLSEN I+DP RGG+PR+VL+ARL+KVQ++NGSE V  RE++DSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY

Arabidopsis top hitse value%identityAlignment
AT1G71440.1 tubulin folding cofactor E / Pfifferling (PFI)1.6e-4358.23Show/hide
Query:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC
        S     SS   Q FN LRLLNL++N I++W+E+LKL QL  LEQ+ LN NKLSRIF         + G   S   + PF +L CLLLG NNI D AS+D 
Subjt:  SVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDC

Query:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY
        LN FPQL+DIRLSEN I+DP RGG+PR+VL+ARL+KVQ++NGSE V  RE++DSEIRY
Subjt:  LNSFPQLIDIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAGATCTGTTTTTCAGCCTGTGTCATCCCCTATGGTCCAAGGATTTAATCTTCTGCGACTTTTGAATCTTGAAAATAACCGTATAGCTGAATGGAATGAAATCTTGAA
ACTTTGTCAATTAAGAAGCTTGGAGCAGATTCAGTTGAATAACAACAAATTGAGCCGTATATTTTATCCTCGCTTGTATGAATTGAACGAGTTATTTGGAGGTGTTGAAT
CACCGGGAGACAATTTTCCATTCCAAAATTTGCGATGCCTCCTTCTTGGAGGCAACAACATCGAGGATTTTGCCTCCATCGACTGTTTAAACTCATTCCCTCAGTTGATT
GACATCAGGCTCTCAGAGAATCTAATAGCTGATCCTGGAAGGGGTGGGATTCCCAGATATGTTTTAATTGCACGATTGTCTAAAGTTCAAATAATAAATGGGAGTGAGGT
GGTAACTCCTCGTGAAAGAAGAGACTCTGAAATACGGTATGGA
mRNA sequenceShow/hide mRNA sequence
TTGAGATCTGTTTTTCAGCCTGTGTCATCCCCTATGGTCCAAGGATTTAATCTTCTGCGACTTTTGAATCTTGAAAATAACCGTATAGCTGAATGGAATGAAATCTTGAA
ACTTTGTCAATTAAGAAGCTTGGAGCAGATTCAGTTGAATAACAACAAATTGAGCCGTATATTTTATCCTCGCTTGTATGAATTGAACGAGTTATTTGGAGGTGTTGAAT
CACCGGGAGACAATTTTCCATTCCAAAATTTGCGATGCCTCCTTCTTGGAGGCAACAACATCGAGGATTTTGCCTCCATCGACTGTTTAAACTCATTCCCTCAGTTGATT
GACATCAGGCTCTCAGAGAATCTAATAGCTGATCCTGGAAGGGGTGGGATTCCCAGATATGTTTTAATTGCACGATTGTCTAAAGTTCAAATAATAAATGGGAGTGAGGT
GGTAACTCCTCGTGAAAGAAGAGACTCTGAAATACGGTATGGA
Protein sequenceShow/hide protein sequence
LRSVFQPVSSPMVQGFNLLRLLNLENNRIAEWNEILKLCQLRSLEQIQLNNNKLSRIFYPRLYELNELFGGVESPGDNFPFQNLRCLLLGGNNIEDFASIDCLNSFPQLI
DIRLSENLIADPGRGGIPRYVLIARLSKVQIINGSEVVTPRERRDSEIRYG