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MS003583 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003583
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L18-like
Genome locationscaffold234:3714263..3714658
RNA-Seq ExpressionMS003583
SyntenyMS003583
Gene Ontology termsGO:0000413 - protein peptidyl-prolyl isomerization (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0006412 - translation (biological process)
GO:0006281 - DNA repair (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
GO:0043138 - 3'-5' DNA helicase activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR036967 - Ribosomal protein S11 superfamily
IPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152485.1 uncharacterized protein LOC111020202 [Momordica charantia]5.9e-67100Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
        AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

XP_022963861.1 uncharacterized protein LOC111464045 [Cucurbita moschata]6.5e-6697.73Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKF+HAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
        AMSYEPRKDER+EGKLGIVID IKENGIMFVP
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

XP_022990182.1 uncharacterized protein LOC111487153 [Cucurbita maxima]7.7e-6799.24Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
        AMSYEPRKDER+EGKLGIVIDTIKENGIMFVP
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

XP_023521951.1 uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]7.7e-6799.24Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
        AMSYEPRKDER+EGKLGIVIDTIKENGIMFVP
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

XP_038886307.1 50S ribosomal protein L18-like [Benincasa hispida]3.2e-6597.71Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFV
        A+SYEPRKDER+EGKLGIVIDTIKENGI+FV
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFV

TrEMBL top hitse value%identityAlignment
A0A1S3B2Q8 50S ribosomal protein L18-like2.0e-6596.97Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFIQSAWTRRSR EAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
        A+SYEPRKDE++EGKLGIVIDTIKENGIMFVP
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

A0A6J1DE20 uncharacterized protein LOC1110202022.9e-67100Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
        AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

A0A6J1HH86 uncharacterized protein LOC1114640453.2e-6697.73Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKF+HAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
        AMSYEPRKDER+EGKLGIVID IKENGIMFVP
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

A0A6J1JHY7 uncharacterized protein LOC1114871533.7e-6799.24Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
        AMSYEPRKDER+EGKLGIVIDTIKENGIMFVP
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

A0A6J1JY30 uncharacterized protein LOC1114893274.6e-6596.21Show/hide
Query:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
        VLFI+SAWTRRSR EAAKRPNKKSWKQRTDMYMRPFLL+VFFSKKF+HAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY
Subjt:  VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVY

Query:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP
        AMSYEPRKDER+EGKLGIVIDTIKENGIMFVP
Subjt:  AMSYEPRKDERVEGKLGIVIDTIKENGIMFVP

SwissProt top hitse value%identityAlignment
A9BG02 50S ribosomal protein L189.3e-0728.1Show/hide
Query:  KRPNKKSWKQRTDMYMRPFL--------LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKD
        K+ +KK+ +Q+  + +R  +        L VF S+K I+A+++       ++ A+T  K L+  L    D NA + +GKLIAE++KE  +  + ++ R  
Subjt:  KRPNKKSWKQRTDMYMRPFL--------LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKD

Query:  ERVEGKLGIVIDTIKENGIMF
         +  GK+  + +  +E G+ F
Subjt:  ERVEGKLGIVIDTIKENGIMF

A9W4S4 50S ribosomal protein L186.0e-0632.26Show/hide
Query:  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGIMF
        L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A V  + ++ R      G++  + D  +E G+ F
Subjt:  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGIMF

B7L0T4 50S ribosomal protein L186.0e-0632.26Show/hide
Query:  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGIMF
        L+VF S K I+ +V+     + ++ A++  KDL++SL +  D  A   +GKL+AER+K A V  + ++ R      G++  + D  +E G+ F
Subjt:  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGIMF

Q5P316 50S ribosomal protein L182.4e-0732.23Show/hide
Query:  RRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKD
        RR+R   AK    KS +           L VF +   I+A+V+    S+V++ A+T   D+R+ LP+  +  A +V+GKLIAER+K A V A++++ R  
Subjt:  RRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKD

Query:  ERVEGKLGIVIDTIKENGIMF
         +  G++  + +  +E G+ F
Subjt:  ERVEGKLGIVIDTIKENGIMF

Q8PNR1 50S ribosomal protein L181.0e-0531.18Show/hide
Query:  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGIMF
        L+V  + + ++A+V     SKVI+ A T   D+++ L +  + +A   +GKLIAER+K A +  ++++ R   R  G++  + D  +E G+ F
Subjt:  LNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGIMF

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein1.1e-2347.79Show/hide
Query:  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGK
        +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK
Subjt:  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGK

Query:  LGIVIDTIKENGI
        +  V+ ++ +NGI
Subjt:  LGIVIDTIKENGI

AT1G08845.2 Ribosomal L18p/L5e family protein1.1e-2347.79Show/hide
Query:  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGK
        +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK
Subjt:  AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGK

Query:  LGIVIDTIKENGI
        +  V+ ++ +NGI
Subjt:  LGIVIDTIKENGI

AT3G20230.1 Ribosomal L18p/L5e family protein2.0e-6084.62Show/hide
Query:  FIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAM
        F+Q+AWTRRSRGEAAKRPN+KSWKQRTDMYMRPFLLNVFFS+KFIHAKVMHR TSKVISVATTNA+D+R ++PSL D+ ACR+IGKLIAERS EADVYA+
Subjt:  FIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAM

Query:  SYEPRKDERVEGKLGIVIDTIKENGIMFVP
        SYEPRK ER+EGKLGIVIDTIKE+GI+FVP
Subjt:  SYEPRKDERVEGKLGIVIDTIKENGIMFVP

AT3G22450.1 Ribosomal L18p/L5e family protein2.0e-1737.84Show/hide
Query:  KRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLG
        KR    ++ Q T  +  PF L+++ SK+ + A V+HR TSKV++VA + +KD++  L S  +  AC  +G ++A+RS E D++ + Y PRK +++EGKL 
Subjt:  KRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLG

Query:  IVIDTIKENGI
        +V+  + +NG+
Subjt:  IVIDTIKENGI

AT5G27820.1 Ribosomal L18p/L5e family protein1.4e-1335.05Show/hide
Query:  YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGI
        Y++P++L + F+ KF+HA+V+H  T+ V   A++  K LR ++    D  A   IGK++ ER    D+ A++ + +K++R  GK+  VID+++E G+
Subjt:  YMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERVEGKLGIVIDTIKENGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTTTATTTATTCAATCAGCTTGGACACGAAGGTCTCGAGGGGAGGCTGCAAAGAGACCGAACAAGAAATCATGGAAACAGAGGACAGATATGTATATGAGGCCATTCTT
ACTAAATGTTTTCTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTGAGGAACAGTC
TACCTTCACTTACAGATCACAATGCATGCAGAGTAATAGGGAAGCTTATTGCTGAGAGATCGAAGGAAGCAGATGTATATGCAATGTCGTATGAGCCTAGGAAGGATGAA
AGAGTTGAAGGTAAGCTTGGTATTGTTATTGATACCATCAAGGAGAACGGGATCATGTTTGTACCT
mRNA sequenceShow/hide mRNA sequence
GTTTTATTTATTCAATCAGCTTGGACACGAAGGTCTCGAGGGGAGGCTGCAAAGAGACCGAACAAGAAATCATGGAAACAGAGGACAGATATGTATATGAGGCCATTCTT
ACTAAATGTTTTCTTTTCGAAGAAATTTATCCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTGATATCAGTGGCGACAACAAATGCAAAGGATCTGAGGAACAGTC
TACCTTCACTTACAGATCACAATGCATGCAGAGTAATAGGGAAGCTTATTGCTGAGAGATCGAAGGAAGCAGATGTATATGCAATGTCGTATGAGCCTAGGAAGGATGAA
AGAGTTGAAGGTAAGCTTGGTATTGTTATTGATACCATCAAGGAGAACGGGATCATGTTTGTACCT
Protein sequenceShow/hide protein sequence
VLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDE
RVEGKLGIVIDTIKENGIMFVP