; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003585 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003585
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic
Genome locationscaffold234:3717361..3717900
RNA-Seq ExpressionMS003585
SyntenyMS003585
Gene Ontology termsNA
InterPro domainsIPR036410 - Heat shock protein DnaJ, cysteine-rich domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033428.1 hypothetical protein SDJN02_07484 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-4075Show/hide
Query:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
        S  S + N+ FPFPF    PPH   I P NK + + SNI FAAA  FSLPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP+CG
Subjt:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG

Query:  NGGLTPEQRGER
         GGLTPEQRGER
Subjt:  NGGLTPEQRGER

XP_022152486.1 uncharacterized protein LOC111020203 [Momordica charantia]6.3e-6299.11Show/hide
Query:  CSCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
        CSCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISF AAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
Subjt:  CSCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG

Query:  NGGLTPEQRGER
        NGGLTPEQRGER
Subjt:  NGGLTPEQRGER

XP_022963874.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata]8.9e-4074.11Show/hide
Query:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
        S  S + N+  PFPF    PPH   I P NK + + SNI FAAA  FSLPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP+CG
Subjt:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG

Query:  NGGLTPEQRGER
         GGLTPEQRGER
Subjt:  NGGLTPEQRGER

XP_022990183.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita maxima]8.9e-4074.11Show/hide
Query:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
        S  S + N+ FPFPF    PPH   I P NK + + SNI FAAA  FSLPKRCQ CGGKGAIDC GCKGTG+NKKNGNIFERWKCFECQGFGLKSCP+CG
Subjt:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG

Query:  NGGLTPEQRGER
         GGLTPEQRGER
Subjt:  NGGLTPEQRGER

XP_023521952.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo]1.0e-4075Show/hide
Query:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
        S  S + N+ FPFPF    PPH   I P NK + + SNI FAAA  FSLPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP+CG
Subjt:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG

Query:  NGGLTPEQRGER
         GGLTPEQRGER
Subjt:  NGGLTPEQRGER

TrEMBL top hitse value%identityAlignment
A0A0A0LIM5 Uncharacterized protein3.0e-3366.96Show/hide
Query:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFAAAATFS-LPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
        + +S +IN IFPF      P +++  S          + FAA  T + LPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCP+CG
Subjt:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFAAAATFS-LPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG

Query:  NGGLTPEQRGER
         GGLTPEQRGER
Subjt:  NGGLTPEQRGER

A0A1S3C9W1 protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic6.0e-3467.27Show/hide
Query:  SSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFAAAATFS-LPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNG
        S+ T   IFPF       P   ++    K      + FAA  T + LPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCP+CG G
Subjt:  SSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFAAAATFS-LPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNG

Query:  GLTPEQRGER
        GLTPEQRGER
Subjt:  GLTPEQRGER

A0A6J1DHW0 uncharacterized protein LOC1110202033.1e-6299.11Show/hide
Query:  CSCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
        CSCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISF AAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
Subjt:  CSCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG

Query:  NGGLTPEQRGER
        NGGLTPEQRGER
Subjt:  NGGLTPEQRGER

A0A6J1HLG5 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic4.3e-4074.11Show/hide
Query:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
        S  S + N+  PFPF    PPH   I P NK + + SNI FAAA  FSLPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP+CG
Subjt:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG

Query:  NGGLTPEQRGER
         GGLTPEQRGER
Subjt:  NGGLTPEQRGER

A0A6J1JSI3 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic4.3e-4074.11Show/hide
Query:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG
        S  S + N+ FPFPF    PPH   I P NK + + SNI FAAA  FSLPKRCQ CGGKGAIDC GCKGTG+NKKNGNIFERWKCFECQGFGLKSCP+CG
Subjt:  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRR-SNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECG

Query:  NGGLTPEQRGER
         GGLTPEQRGER
Subjt:  NGGLTPEQRGER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G22630.1 unknown protein8.0e-3171.08Show/hide
Query:  RRSNISFAAA--ATFSLP---KRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNGGLTPEQRGER
        RR  I  +A     FSL    K C+ CG KGAI+CPGCKGTGKNKKNGN+FERWKCF+CQGFG+KSCP+CG GGLTPEQRGER
Subjt:  RRSNISFAAA--ATFSLP---KRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNGGLTPEQRGER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCTCTTGCAGTTCTCACACTATCAACACCATCTTCCCGTTCCCGTTCCCACCCCCGCCCCCGCCCCATCGGCTTCTCATATCGCCGCCAAATAAATTTAAAAGAAGATC
CAATATCTCCTTCGCTGCTGCTGCAACATTTTCTCTTCCCAAAAGATGCCAAAAGTGTGGAGGTAAAGGGGCCATCGATTGTCCTGGATGCAAGGGGACTGGGAAAAACA
AGAAAAACGGAAACATATTCGAGCGTTGGAAATGTTTCGAGTGTCAAGGATTCGGATTAAAGAGCTGTCCTGAATGTGGAAACGGAGGACTCACTCCTGAACAAAGAGGA
GAAAGA
mRNA sequenceShow/hide mRNA sequence
TGCTCTTGCAGTTCTCACACTATCAACACCATCTTCCCGTTCCCGTTCCCACCCCCGCCCCCGCCCCATCGGCTTCTCATATCGCCGCCAAATAAATTTAAAAGAAGATC
CAATATCTCCTTCGCTGCTGCTGCAACATTTTCTCTTCCCAAAAGATGCCAAAAGTGTGGAGGTAAAGGGGCCATCGATTGTCCTGGATGCAAGGGGACTGGGAAAAACA
AGAAAAACGGAAACATATTCGAGCGTTGGAAATGTTTCGAGTGTCAAGGATTCGGATTAAAGAGCTGTCCTGAATGTGGAAACGGAGGACTCACTCCTGAACAAAGAGGA
GAAAGA
Protein sequenceShow/hide protein sequence
CSCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFAAAATFSLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNGGLTPEQRG
ER