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MS003613 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003613
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVQ domain-containing protein
Genome locationscaffold963:85642..85926
RNA-Seq ExpressionMS003613
SyntenyMS003613
Gene Ontology termsNA
InterPro domainsIPR008889 - VQ
IPR039610 - VQ motif-containing protein 29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045761.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa]1.2e-1657.69Show/hide
Query:  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGE---GAVFYYGYPGVGF
        MEPHS S       +   K   +AVAP  PTPPQVYKV+P++FRDVVQKLTAAPEFQDRRLQAMP PRP+    S    D SGE   G V Y+G+     
Subjt:  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGE---GAVFYYGYPGVGF

Query:  SERY
        SERY
Subjt:  SERY

KAA8522582.1 hypothetical protein F0562_013057 [Nyssa sinensis]2.1e-1357.53Show/hide
Query:  HSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFS
        HS    P  KPW + +APLPPTPP++YKV+ V+FR+VVQKLTAAPEFQ RRLQ++     +PPP + + T FS
Subjt:  HSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFS

KAE8651906.1 hypothetical protein Csa_006780 [Cucumis sativus]2.2e-1560Show/hide
Query:  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEG
        MEPHS S       +P  K   + VAP  P+PPQVYKV+P++FRDVVQKLTAAP+FQDRRLQAMP PRP     S+   D SGEG
Subjt:  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEG

KAG6605217.1 hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia]2.5e-1151.65Show/hide
Query:  MEPHSSSSS----------------PAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRP---SPPPGSAAR
        MEPHS SSS                 + +   +AVAP PP PP+VYKV P++FRDVVQKLT+ PE+ D RL+AMPAPRP   +PPP S+ R
Subjt:  MEPHSSSSS----------------PAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRP---SPPPGSAAR

XP_022149539.1 VQ motif-containing protein 29 [Momordica charantia]1.3e-4496.84Show/hide
Query:  MEPHSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEGAVFYYGYPGVGFSERY
        MEPHSSSSSPAVKPWNRAVAPLPPTPPQ+YKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAA TDFSGEGAV YYGYPGVGFSERY
Subjt:  MEPHSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEGAVFYYGYPGVGFSERY

TrEMBL top hitse value%identityAlignment
A0A0A0LPS3 VQ domain-containing protein3.4e-1463.38Show/hide
Query:  SPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEG
        +P  K   + VAP  P+PPQVYKV+P++FRDVVQKLTAAP+FQDRRLQAMP PRP     S+   D SGEG
Subjt:  SPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEG

A0A5A7TW54 VQ motif-containing protein 295.7e-1757.69Show/hide
Query:  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGE---GAVFYYGYPGVGF
        MEPHS S       +   K   +AVAP  PTPPQVYKV+P++FRDVVQKLTAAPEFQDRRLQAMP PRP+    S    D SGE   G V Y+G+     
Subjt:  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGE---GAVFYYGYPGVGF

Query:  SERY
        SERY
Subjt:  SERY

A0A5J4ZYQ3 VQ domain-containing protein1.0e-1357.53Show/hide
Query:  HSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFS
        HS    P  KPW + +APLPPTPP++YKV+ V+FR+VVQKLTAAPEFQ RRLQ++     +PPP + + T FS
Subjt:  HSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFS

A0A6J1D7B4 VQ motif-containing protein 296.4e-4596.84Show/hide
Query:  MEPHSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEGAVFYYGYPGVGFSERY
        MEPHSSSSSPAVKPWNRAVAPLPPTPPQ+YKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAA TDFSGEGAV YYGYPGVGFSERY
Subjt:  MEPHSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEGAVFYYGYPGVGFSERY

A0A7J7DLN8 VQ domain-containing protein2.1e-1159.68Show/hide
Query:  SSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPP
        S   P +KPW + +APLPPTPP+VYKV+PV+FRD+VQKLT+APEFQ +RL+ +     +PPP
Subjt:  SSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G37710.1 VQ motif-containing protein5.4e-0444.83Show/hide
Query:  HSSSSSPAVKPWNRAV--APLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMP
        HS+   P+ KP  R    +PL P  P VY+V PV+F+ +VQ+LT APE +   +QA P
Subjt:  HSSSSSPAVKPWNRAV--APLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCTCACTCCTCTTCTTCTTCGCCGGCGGTCAAGCCATGGAACAGGGCCGTGGCGCCGCTGCCGCCGACTCCGCCGCAGGTTTACAAGGTGAACCCCGTCGACTT
TCGGGACGTGGTCCAGAAGCTAACTGCGGCGCCCGAGTTCCAGGACCGCCGCCTCCAAGCCATGCCTGCCCCCCGCCCCAGCCCGCCCCCGGGTTCCGCCGCTCGCACGG
ATTTTTCTGGCGAGGGGGCTGTTTTTTACTATGGGTATCCTGGAGTTGGATTCTCTGAAAGATAT
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCTCACTCCTCTTCTTCTTCGCCGGCGGTCAAGCCATGGAACAGGGCCGTGGCGCCGCTGCCGCCGACTCCGCCGCAGGTTTACAAGGTGAACCCCGTCGACTT
TCGGGACGTGGTCCAGAAGCTAACTGCGGCGCCCGAGTTCCAGGACCGCCGCCTCCAAGCCATGCCTGCCCCCCGCCCCAGCCCGCCCCCGGGTTCCGCCGCTCGCACGG
ATTTTTCTGGCGAGGGGGCTGTTTTTTACTATGGGTATCCTGGAGTTGGATTCTCTGAAAGATAT
Protein sequenceShow/hide protein sequence
MEPHSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEGAVFYYGYPGVGFSERY