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MS003694 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003694
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationscaffold185:420919..421205
RNA-Seq ExpressionMS003694
SyntenyMS003694
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158198.1 uncharacterized protein LOC111024735 [Momordica charantia]2.5e-1146.94Show/hide
Query:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK--NLYRHKENLFHTRCLVNSTPCIVIIYTG
        G+ HISR+CPN+R M I  GE+VTD +E  +D++ E K +  +EE E   D   + LV RR LN++ K  ++   ++NLFHTRCLVN TPC ++I +G
Subjt:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK--NLYRHKENLFHTRCLVNSTPCIVIIYTG

XP_022159097.1 uncharacterized protein LOC111025539 [Momordica charantia]1.4e-0947.96Show/hide
Query:  GVDHISRNCPNQRAMIHR-GELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK--NLYRHKENLFHTRCLVNSTPCIVIIYTG
        GV HISR CPN+R MI R GE+VTD  E   ++ E   +  S+EE E   D+  ++LV RR L+   +  NL   +ENLFHTRCLV + PC V+I +G
Subjt:  GVDHISRNCPNQRAMIHR-GELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK--NLYRHKENLFHTRCLVNSTPCIVIIYTG

XP_022930025.1 uncharacterized protein LOC111436463, partial [Cucurbita moschata]4.0e-0949.48Show/hide
Query:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG
        GV H SR+CPN R M I  GE+VTDD  E  D + E  +ES   E+  E+D   I+LV RR LN   K +    +ENLF TRCLV S PC V+I +G
Subjt:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG

XP_023520282.1 uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]4.0e-0949.48Show/hide
Query:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG
        GV H SR+CPN R M I  GE+VTDD  E  D + E  +ES   E+  E+D   I+LV RR LN   K +    +ENLF TRCLV S PC V+I +G
Subjt:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG

XP_023530046.1 uncharacterized protein LOC111792716 [Cucurbita pepo subsp. pepo]4.0e-0949.48Show/hide
Query:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG
        GV H SR+CPN R M I  GE+VTDD  E  D + E  +ES   E+  E+D   I+LV RR LN   K +    +ENLF TRCLV S PC V+I +G
Subjt:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG

TrEMBL top hitse value%identityAlignment
A0A6J1DVF2 uncharacterized protein LOC1110247351.2e-1146.94Show/hide
Query:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK--NLYRHKENLFHTRCLVNSTPCIVIIYTG
        G+ HISR+CPN+R M I  GE+VTD +E  +D++ E K +  +EE E   D   + LV RR LN++ K  ++   ++NLFHTRCLVN TPC ++I +G
Subjt:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK--NLYRHKENLFHTRCLVNSTPCIVIIYTG

A0A6J1DYV9 uncharacterized protein LOC1110255395.1e-1048.98Show/hide
Query:  GVDHISRNCPNQRAMIHR-GELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK--NLYRHKENLFHTRCLVNSTPCIVIIYTG
        GV HISR CPN+R MI R GELVTD  E   ++ E   +  S+EE E   D+  ++LV RR L+   +  NL   +ENLFHTRCLV + PC V+I +G
Subjt:  GVDHISRNCPNQRAMIHR-GELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK--NLYRHKENLFHTRCLVNSTPCIVIIYTG

A0A6J1EVV9 uncharacterized protein LOC1114364632.0e-0949.48Show/hide
Query:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG
        GV H SR+CPN R M I  GE+VTDD  E  D + E  +ES   E+  E+D   I+LV RR LN   K +    +ENLF TRCLV S PC V+I +G
Subjt:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG

A0A6J1G2Q3 uncharacterized protein LOC1114502862.0e-0949.48Show/hide
Query:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG
        GV H SR+CPN R M I  GE+VTDD  E  D + E  +ES   E+  E+D   I+LV RR LN   K +    +ENLF TRCLV S PC V+I +G
Subjt:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG

A0A6J1I8S0 uncharacterized protein LOC1114724892.0e-0949.48Show/hide
Query:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG
        GV H SR+CPN R M I  GE+VTDD  E  D + E  +ES   E+  E+D   I+LV RR LN   K +    +ENLF TRCLV S PC V+I +G
Subjt:  GVDHISRNCPNQRAM-IHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFK-NLYRHKENLFHTRCLVNSTPCIVIIYTG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAGTAGACCACATAAGCCGAAATTGTCCAAACCAAAGAGCCATGATCCATAGGGGAGAGCTTGTCACGGATGATAAGGAAGAAGTTAGAGATAAGGTTGAAGAA
AGAAAAGAAGAGAGTAGTCAAGAAGAGAAAGAAATAGAGCAGGATTCCAAGGACATAACACTGGTTGCTAGGAGGAACCTAAATGTGAAATTCAAGAACCTTTAC
AGACACAAAGAAAACTTGTTCCATACTAGGTGCTTAGTGAACTCCACTCCATGTATTGTCATAATTTATACTGGA
mRNA sequenceShow/hide mRNA sequence
GGAGTAGACCACATAAGCCGAAATTGTCCAAACCAAAGAGCCATGATCCATAGGGGAGAGCTTGTCACGGATGATAAGGAAGAAGTTAGAGATAAGGTTGAAGAA
AGAAAAGAAGAGAGTAGTCAAGAAGAGAAAGAAATAGAGCAGGATTCCAAGGACATAACACTGGTTGCTAGGAGGAACCTAAATGTGAAATTCAAGAACCTTTAC
AGACACAAAGAAAACTTGTTCCATACTAGGTGCTTAGTGAACTCCACTCCATGTATTGTCATAATTTATACTGGA
Protein sequenceShow/hide protein sequence
GVDHISRNCPNQRAMIHRGELVTDDKEEVRDKVEERKEESSQEEKEIEQDSKDITLVARRNLNVKFKNLYRHKENLFHTRCLVNSTPCIVIIYTG