CuGenDBv2

Gene ID	MS003749
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	scaffold127:172208..172445
RNA-Seq Expression	MS003749
Synteny	MS003749
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

QBC69183.1 RNA polymerase beta subunit [Plumbago auriculata]

5.0e-26

81.01

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQP RDDHNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

YP_009435494.1 RNA polymerase beta' subunit [Lobelia sonderiana]

3.8e-26

81.01

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNG+RGQPTRD HNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGPALSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

YP_009568275.1 RNA polymerase beta [Plumbago auriculata]

5.0e-26

81.01

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQP RDDHNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

YP_009972398.1 RNA polymerase beta' subunit [Distemonanthus benthamianus]

1.7e-26

82.28

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQPTRD HNKVYKSFSNVIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

YP_010024322.1 RNA polymerase beta' subunit [Agastache rugosa]

6.6e-26

81.01

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQPTRD HNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

TrEMBL top hits

e value

%identity

Alignment

A0A291F033 DNA-directed RNA polymerase subunit gamma

1.9e-26

81.01

Show/hide

Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNG+RGQPTRD HNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGPALSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

A0A411JVR6 DNA-directed RNA polymerase subunit gamma

2.4e-26

81.01

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQP RDDHNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

A0A4D6UXW4 DNA-directed RNA polymerase subunit beta'

3.2e-26

81.01

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQPTRD HNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

A0A7G7XQ36 DNA-directed RNA polymerase subunit beta'

8.4e-27

82.28

Show/hide

Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQPTRD HNKVYKSFSNVIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

D3WF13 DNA-directed RNA polymerase subunit beta'

2.4e-26

81.01

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQP RDDHNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

SwissProt top hits

e value

%identity

Alignment

A1XGM9 DNA-directed RNA polymerase subunit beta'

1.1e-28

79.75

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQPTRD HNK+YKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

A9LYH6 DNA-directed RNA polymerase subunit beta'

4.3e-28

79.75

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQP RD HNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

Q09FX0 DNA-directed RNA polymerase subunit beta'

3.3e-28

79.75

Show/hide

Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQP RD HNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

Q3V543 DNA-directed RNA polymerase subunit beta'

4.3e-28

79.75

Show/hide

Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQP RD HNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

Q5QA71 DNA-directed RNA polymerase subunit beta'

4.3e-28

79.75

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Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQP RD HNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00180.1 DNA-directed RNA polymerase family protein

3.0e-29

79.75

Show/hide

Query:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE
        MC EKLVQ  V+TLLDNGIRGQP RD HNKVYKSFS+VIEGK+G+FRET LGK+V+YSG  VIVVGP+LSLHR GLPRE
Subjt:  MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRET-LGKQVNYSG-FVIVVGPALSLHRYGLPRE

Sequences

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CDS sequence

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ATGTGTTCGGAAAAATTGGTCCAAGGAACGGTGAATACACTTCTTGATAATGGAATTCGTGGACAACCAACGAGGGATGACCATAATAAGGTTTACAAGTCGTTTTCCAA
TGTAATTGAAGGAAAAGATGGAAAATTTCGTGAGACTCTTGGCAAACAGGTCAATTATTCAGGCTTTGTGATTGTTGTAGGACCCGCACTTTCATTACATCGATATGGAT
TGCCTCGCGAA

mRNA sequence

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Protein sequence

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MCSEKLVQGTVNTLLDNGIRGQPTRDDHNKVYKSFSNVIEGKDGKFRETLGKQVNYSGFVIVVGPALSLHRYGLPRE

MS003749 (gene) of Bitter gourd (TR) v1 genome