; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003753 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003753
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonucloprotein
Genome locationscaffold127:199345..200747
RNA-Seq ExpressionMS003753
SyntenyMS003753
Gene Ontology termsGO:0042254 - ribosome biogenesis (biological process)
GO:0050790 - regulation of catalytic activity (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005096 - GTPase activator activity (molecular function)
InterPro domainsIPR002415 - H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
IPR004037 - Ribosomal protein L7Ae conserved site
IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR018492 - Ribosomal protein L7Ae/L8/Nhp2 family
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587925.1 NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]5.4e-5793.7Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMA+DTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVTTNEGSQLKSQIQQLK  ++ L +
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

KAG6589855.1 NHP2-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]2.4e-5794.49Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVTTNEGSQLKSQIQQLK  ++ L +
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

KOM46534.1 hypothetical protein LR48_Vigan07g023800 [Vigna angularis]3.1e-5796.75Show/hide
Query:  QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        QT E VNPKAYPLADAQLTITILDLVQQAANYKQ+KKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKVIM
        ACSVTTNEGSQLKSQIQQLKV M
Subjt:  ACSVTTNEGSQLKSQIQQLKVIM

XP_022144837.1 NHP2-like protein 1 isoform X1 [Momordica charantia]8.3e-5894.53Show/hide
Query:  QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKVIMQCLTV
        ACSVTTNEGSQLKSQIQQLK  ++ L +
Subjt:  ACSVTTNEGSQLKSQIQQLKVIMQCLTV

XP_022144838.1 NHP2-like protein 1 isoform X2 [Momordica charantia]2.4e-5794.49Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVTTNEGSQLKSQIQQLK  ++ L +
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

TrEMBL top hitse value%identityAlignment
A0A0L9UVH7 Ribonucloprotein1.5e-5796.75Show/hide
Query:  QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        QT E VNPKAYPLADAQLTITILDLVQQAANYKQ+KKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKVIM
        ACSVTTNEGSQLKSQIQQLKV M
Subjt:  ACSVTTNEGSQLKSQIQQLKVIM

A0A6J1CUC5 Ribonucloprotein1.2e-5794.49Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVTTNEGSQLKSQIQQLK  ++ L +
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

A0A6J1CUU5 Ribonucloprotein4.0e-5894.53Show/hide
Query:  QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  ACSVTTNEGSQLKSQIQQLKVIMQCLTV
        ACSVTTNEGSQLKSQIQQLK  ++ L +
Subjt:  ACSVTTNEGSQLKSQIQQLKVIMQCLTV

A0A6J1H9B8 Ribonucloprotein1.2e-5794.49Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVTTNEGSQLKSQIQQLK  ++ L +
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

A0A6J1KF93 Ribonucloprotein1.2e-5794.49Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVTTNEGSQLKSQIQQLK  ++ L +
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

SwissProt top hitse value%identityAlignment
P55769 NHP2-like protein 11.2e-4877.17Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVT  EGSQLK QIQ ++  ++ L V
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

Q3B8S0 NHP2-like protein 11.2e-4877.17Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVT  EGSQLK QIQ ++  ++ L V
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

Q4R5C6 NHP2-like protein 11.2e-4877.17Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T   VNPKAYPLADA LT  +LDLVQQ+ NYKQ++KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVT  EGSQLK QIQ ++  ++ L V
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

Q5XH16 NHP2-like protein 13.9e-5078.74Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T  +VNPKAYPLADAQLT T+LDLVQQ+ANYKQ++KGANEATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVT  EGSQLK QIQ ++  ++ L V
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

Q6P8E9 NHP2-like protein 12.3e-5079.53Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T  +VNPKAYPLADAQLT T+LDLVQQAANYKQ++KGANEATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        C+VT  EGSQLK QIQ L+  ++ L V
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

Arabidopsis top hitse value%identityAlignment
AT4G12600.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein6.3e-5685.83Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVT+NE SQLKSQIQ LK  ++ L +
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

AT4G12600.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.8e-4859.89Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK-------------------------
        T E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDK                         
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK-------------------------

Query:  ------------------------------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKVIMQCLTV
                                      NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LK  ++ L +
Subjt:  ------------------------------NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKVIMQCLTV

AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein4.8e-5685.83Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T E VNPKAYPLAD+QL+ITI+DLVQQA NYKQ+KKGANEATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVT+NE SQLKSQIQ LK  ++ L +
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

AT5G20160.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.8e-5686.61Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
        T E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANEATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIA

Query:  CSVTTNEGSQLKSQIQQLKVIMQCLTV
        CSVT+NE SQLKSQIQ LK  ++ L +
Subjt:  CSVTTNEGSQLKSQIQQLKVIMQCLTV

AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.7e-5169.18Show/hide
Query:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANE--------------------------------ATKTLNRGISEFVVMAADTEPLEILLHL
        T E VNPKAYPLAD+QL+ITILDLVQQA NYKQ+KKGANE                                ATKTLNRGISEFVVMAAD EPLEILLHL
Subjt:  TAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANE--------------------------------ATKTLNRGISEFVVMAADTEPLEILLHL

Query:  PLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKVIMQCLTV
        PLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LK  ++ L +
Subjt:  PLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKVIMQCLTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGACTGCAGAGAAAGTGAACCCGAAGGCTTACCCTCTCGCCGACGCGCAGCTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAA
GGGCGCCAATGAAGCGACCAAGACGCTGAACAGAGGCATATCTGAGTTCGTTGTGATGGCCGCCGATACCGAGCCGCTTGAAATCCTCCTCCATCTTCCCCTGTTAGCCG
AGGATAAGAATGTGCCGTATGTGTTCGTCCCTTCTAAGCAAGCACTTGGCCGAGCTTGTGGAGTCACAAGACCTGTTATTGCTTGTTCTGTGACAACAAACGAAGGAAGC
CAACTGAAGTCACAAATACAGCAACTCAAGGTAATTATGCAATGTTTGACAGTA
mRNA sequenceShow/hide mRNA sequence
CAGACTGCAGAGAAAGTGAACCCGAAGGCTTACCCTCTCGCCGACGCGCAGCTTACAATCACCATTCTTGATCTTGTTCAACAAGCTGCTAACTACAAGCAAATCAAGAA
GGGCGCCAATGAAGCGACCAAGACGCTGAACAGAGGCATATCTGAGTTCGTTGTGATGGCCGCCGATACCGAGCCGCTTGAAATCCTCCTCCATCTTCCCCTGTTAGCCG
AGGATAAGAATGTGCCGTATGTGTTCGTCCCTTCTAAGCAAGCACTTGGCCGAGCTTGTGGAGTCACAAGACCTGTTATTGCTTGTTCTGTGACAACAAACGAAGGAAGC
CAACTGAAGTCACAAATACAGCAACTCAAGGTAATTATGCAATGTTTGACAGTA
Protein sequenceShow/hide protein sequence
QTAEKVNPKAYPLADAQLTITILDLVQQAANYKQIKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGS
QLKSQIQQLKVIMQCLTV