; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003756 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003756
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAlba domain-containing protein
Genome locationscaffold127:216401..217984
RNA-Seq ExpressionMS003756
SyntenyMS003756
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150019.1 uncharacterized protein At2g34160 [Cucumis sativus]9.0e-60100Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAAAEERENEDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

XP_022924689.1 uncharacterized protein At2g34160-like [Cucurbita moschata]2.2e-5898.46Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAAAEEREN DGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

XP_022961070.1 uncharacterized protein At2g34160-like [Cucurbita moschata]3.4e-5999.23Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAAAEERENEDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

XP_022972044.1 uncharacterized protein At2g34160-like [Cucurbita maxima]2.2e-5898.46Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAAAEEREN DGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

XP_022987902.1 uncharacterized protein At2g34160-like [Cucurbita maxima]1.3e-5898.46Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAA EERENEDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

TrEMBL top hitse value%identityAlignment
A0A0A0LZB6 Alba domain-containing protein4.3e-60100Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAAAEERENEDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

A0A1S3B8Y2 uncharacterized protein At2g34160-like4.3e-60100Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAAAEERENEDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

A0A5A7TV88 Alba domain-containing protein4.3e-60100Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAAAEERENEDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

A0A6J1CUJ0 uncharacterized protein At2g34160-like4.3e-60100Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAAAEERENEDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

A0A6J1HAY2 uncharacterized protein At2g34160-like1.7e-5999.23Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EIVLGKTENFDELMAAAAEERENEDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341602.3e-5081.54Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEIT+GVN++ L  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIATVVTV EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EI L K+E FDELMAAA EE+E+ + + Q+
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein1.9e-5283.08Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVN++ L  D+QKKNRIQVSNTKKPLFFYVNLAKRYMQQY +VELSALGMAIATVVTVAEILKNNG A+EKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EI L K+E FDELMAAA EE+E  + +EQ+
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

AT2G34160.1 Alba DNA/RNA-binding protein1.6e-5181.54Show/hide
Query:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEIT+GVN++ L  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIATVVTV EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAKI
Subjt:  MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENEDGEEQS
        EI L K+E FDELMAAA EE+E+ + + Q+
Subjt:  EIVLGKTENFDELMAAAAEERENEDGEEQS

AT3G04620.1 Alba DNA/RNA-binding protein6.0e-3864.75Show/hide
Query:  ITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIV
        +     + T T ++ KKNRIQVSNTKKPLFFYVNLAKRY+QQ+NEVELSALGMAI TVVT++EILKNNGLA EKK++TSTV +KD+++G+ VQKAKIEIV
Subjt:  ITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIV

Query:  LGKTENFDELMAAAAEERENED
        LGK++ FD L+      +  E+
Subjt:  LGKTENFDELMAAAAEERENED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGATAACCGAGGGTGTCAACTCCATCACCTTGACAGCCGATTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTTTTCTTCTATGTCAA
TCTCGCCAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGGATGGCCATTGCTACAGTTGTGACTGTTGCAGAAATTCTGAAAAACAATGGATTGG
CTTTAGAAAAGAAGATAATGACTTCTACTGTCGATATCAAGGATGATTCTCGGGGGAGACCAGTCCAAAAGGCTAAGATTGAGATTGTGTTGGGGAAAACTGAAAACTTC
GATGAACTGATGGCAGCTGCGGCAGAGGAAAGGGAAAACGAAGATGGTGAAGAACAGAGT
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGATAACCGAGGGTGTCAACTCCATCACCTTGACAGCCGATTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCCCTTTTCTTCTATGTCAA
TCTCGCCAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGGATGGCCATTGCTACAGTTGTGACTGTTGCAGAAATTCTGAAAAACAATGGATTGG
CTTTAGAAAAGAAGATAATGACTTCTACTGTCGATATCAAGGATGATTCTCGGGGGAGACCAGTCCAAAAGGCTAAGATTGAGATTGTGTTGGGGAAAACTGAAAACTTC
GATGAACTGATGGCAGCTGCGGCAGAGGAAAGGGAAAACGAAGATGGTGAAGAACAGAGT
Protein sequenceShow/hide protein sequence
MEEITEGVNSITLTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENF
DELMAAAAEERENEDGEEQS