; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS003763 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS003763
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationscaffold127:269684..270381
RNA-Seq ExpressionMS003763
SyntenyMS003763
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150016.3 zinc finger Ran-binding domain-containing protein 2 isoform X2 [Cucumis sativus]6.9e-8092.7Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CGAHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPR+GCGVHNYASR+ECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

XP_008465020.2 PREDICTED: uncharacterized protein LOC103502740 isoform X3 [Cucumis melo]6.9e-8092.7Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CGAHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPR+GCGVHNYASR+ECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

XP_008465021.2 PREDICTED: uncharacterized protein LOC103502740 isoform X2 [Cucumis melo]6.9e-8092.7Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CGAHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPR+GCGVHNYASR+ECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

XP_011656267.2 zinc finger Ran-binding domain-containing protein 2 isoform X1 [Cucumis sativus]6.9e-8092.7Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CGAHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPR+GCGVHNYASR+ECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

XP_022144861.1 zinc finger Ran-binding domain-containing protein 2-like [Momordica charantia]7.9e-84100Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

TrEMBL top hitse value%identityAlignment
A0A0A0LWE1 Uncharacterized protein3.4e-8092.7Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CGAHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPR+GCGVHNYASR+ECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

A0A1S3CMY6 uncharacterized protein LOC103502740 isoform X23.4e-8092.7Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CGAHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPR+GCGVHNYASR+ECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

A0A1S3CPF6 uncharacterized protein LOC103502740 isoform X33.4e-8092.7Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CGAHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPR+GCGVHNYASR+ECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

A0A5D3E0T0 Zinc finger Ran-binding domain-containing protein 2-like isoform X33.4e-8092.7Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWS+GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTE LAGDWYC+TV+CGAHNYASRPNCFRCGAFKSVY GDYG YMMGSDQY SDAS+
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPR+GCGVHNYASR+ECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

A0A6J1CUX1 zinc finger Ran-binding domain-containing protein 2-like3.8e-84100Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
        MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASV

Query:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
Subjt:  PPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c2.1e-0725.38Show/hide
Query:  GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYN-KTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGW
        GDW C +C   NF++R +C RC +P       +T S     +   G+ Y +  +    NY    +       +S      G   +     +        +
Subjt:  GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYN-KTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGW

Query:  KSGDWICPRLGCGVHNYASRLECFKCKTPR
        ++GDW C   GCG HN+A  + C +C   R
Subjt:  KSGDWICPRLGCGVHNYASRLECFKCKTPR

O95218 Zinc finger Ran-binding domain-containing protein 24.5e-0535.96Show/hide
Query:  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WKSGDWICPRLGCGVHNYASRLECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+  A      MM   G++   + A    G + + DW C    C   N+A R EC  C TP+
Subjt:  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WKSGDWICPRLGCGVHNYASRLECFKCKTPR

Q19QU3 Zinc finger Ran-binding domain-containing protein 24.5e-0535.96Show/hide
Query:  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WKSGDWICPRLGCGVHNYASRLECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+  A      MM   G++   + A    G + + DW C    C   N+A R EC  C TP+
Subjt:  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WKSGDWICPRLGCGVHNYASRLECFKCKTPR

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 29.0e-0637.08Show/hide
Query:  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WKSGDWICPRLGCGVHNYASRLECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+  A      MM   G++   + A    G + + DW C    CG  N+A R EC  C TP+
Subjt:  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WKSGDWICPRLGCGVHNYASRLECFKCKTPR

Q9R020 Zinc finger Ran-binding domain-containing protein 24.5e-0535.96Show/hide
Query:  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WKSGDWICPRLGCGVHNYASRLECFKCKTPR
        GDW C    CG  N+A R +C RCG  K+  A      MM   G++   + A    G + + DW C    C   N+A R EC  C TP+
Subjt:  GDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMM---GSDQYASDASVPPG-WKSGDWICPRLGCGVHNYASRLECFKCKTPR

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein2.3e-0430.43Show/hide
Query:  GDWICNVCQNVNFKKREACHRCG-YPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRC
        GDW C  C+ +NF K   C RC  + +           +   +  GDW C T  C   N++    C RC
Subjt:  GDWICNVCQNVNFKKREACHRCG-YPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRC

AT2G17975.1 zinc finger (Ran-binding) family protein6.2e-1834.9Show/hide
Query:  GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYA------------------------
        GDW C  C+N N+  R  C+RC  P+    D +T   +K     GDW C+   C  +NYASR  C +CG  K V A                        
Subjt:  GDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYA------------------------

Query:  GDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHNYASRLECFKC
         D    ++      + ASV   W+SGDWIC    CG HNY+SR++C KC
Subjt:  GDYGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHNYASRLECFKC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.4e-5764.75Show/hide
Query:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGD-YGTYMMGSDQYASD-A
        MSW+ GDW+C  CQ+ NFKKRE+C +CGYPK+GG D STY YN+TEV+AGDWYC  +NCG+HNYASR +C+RCG  K  Y    YG  M+    Y +D A
Subjt:  MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGD-YGTYMMGSDQYASD-A

Query:  SVPPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG
        + PPGWK+GDW+CPR+GCGVHNYASR ECFKCKT RD+G
Subjt:  SVPPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRDFG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein2.1e-3443.51Show/hide
Query:  GDWICNVCQNVNFKKREACHRCG-------------YPKYGGPDPSTYSYNK-TEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFK-SVYAGDYGTYMMG
        GDW C  C ++NF++R++C RCG             +  +GG   S + +   ++V  GDWYC+  NCG HN+ASR  CF+CG FK    AG  G  + G
Subjt:  GDWICNVCQNVNFKKREACHRCG-------------YPKYGGPDPSTYSYNK-TEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFK-SVYAGDYGTYMMG

Query:  SDQYASD--ASVPPG------WKSGDWICPRLGCGVHNYASRLECFKCKTPRDF
           + +D   S  PG      WKSGDWIC R+GC  HN+ASR+ECF+C  PRDF
Subjt:  SDQYASD--ASVPPG------WKSGDWICPRLGCGVHNYASRLECFKCKTPRDF

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein2.2e-3137.11Show/hide
Query:  GDWICNVCQNVNFKKREACHRCGYPKYGG------------PDPSTYSYNK-TEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGD---------
        GDW C +C ++NF++R++C RC  P+ GG            P  S++ +N   +V  GDWYC+  +CG HN+A+R +CF+CGA K  ++           
Subjt:  GDWICNVCQNVNFKKREACHRCGYPKYGG------------PDPSTYSYNK-TEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGD---------

Query:  -------YGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRD
                G +  G        +    WKSGDWICPR GC  HN+ASR ECF+C  P++
Subjt:  -------YGTYMMGSDQYASDASVPPGWKSGDWICPRLGCGVHNYASRLECFKCKTPRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTGGTCATCAGGAGATTGGATATGCAACGTTTGCCAAAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGTGGTTACCCCAAGTATGGCGGCCCAGACCC
TTCAACTTACAGTTACAACAAGACGGAGGTGTTGGCCGGAGACTGGTACTGCTCCACCGTCAACTGTGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGTG
GTGCATTTAAGTCTGTCTATGCCGGTGATTATGGCACCTACATGATGGGTTCCGATCAGTATGCCTCAGATGCAAGTGTCCCACCTGGATGGAAATCTGGAGACTGGATT
TGCCCTAGATTGGGATGCGGAGTACACAATTATGCAAGCAGGTTGGAGTGTTTTAAATGCAAAACACCAAGGGATTTTGGTAAGTTTATATCAATTAGACATTTACTTAT
GTTATCTGCCCCT
mRNA sequenceShow/hide mRNA sequence
ATGAGCTGGTCATCAGGAGATTGGATATGCAACGTTTGCCAAAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGTGGTTACCCCAAGTATGGCGGCCCAGACCC
TTCAACTTACAGTTACAACAAGACGGAGGTGTTGGCCGGAGACTGGTACTGCTCCACCGTCAACTGTGGAGCTCACAATTACGCCAGCCGCCCGAACTGCTTTAGATGTG
GTGCATTTAAGTCTGTCTATGCCGGTGATTATGGCACCTACATGATGGGTTCCGATCAGTATGCCTCAGATGCAAGTGTCCCACCTGGATGGAAATCTGGAGACTGGATT
TGCCCTAGATTGGGATGCGGAGTACACAATTATGCAAGCAGGTTGGAGTGTTTTAAATGCAAAACACCAAGGGATTTTGGTAAGTTTATATCAATTAGACATTTACTTAT
GTTATCTGCCCCT
Protein sequenceShow/hide protein sequence
MSWSSGDWICNVCQNVNFKKREACHRCGYPKYGGPDPSTYSYNKTEVLAGDWYCSTVNCGAHNYASRPNCFRCGAFKSVYAGDYGTYMMGSDQYASDASVPPGWKSGDWI
CPRLGCGVHNYASRLECFKCKTPRDFGKFISIRHLLMLSAP